Comparison of Four Complete Chloroplast Genomes of Medicinal and Ornamental Meconopsis Species: Genome Organization and Species Discrimination

X Li, W Tan, J Sun, J Du, C Zheng, X Tian, M Zheng… - Scientific reports, 2019 - nature.com
High-throughput sequencing of chloroplast genomes has been used to gain insight into the
evolutionary relationships of plant species. In this study, we sequenced the complete …

De Novo Assembly of Complete Chloroplast Genomes from Non-model Species Based on a K-mer Frequency-Based Selection of Chloroplast Reads from Total DNA …

S Izan, D Esselink, RGF Visser… - Frontiers in Plant …, 2017 - frontiersin.org
Whole Genome Shotgun (WGS) sequences of plant species often contain an abundance of
reads that are derived from the chloroplast genome. Up to now these reads have generally …

ChloroplastDB: the chloroplast genome database

L Cui, N Veeraraghavan, A Richter, K Wall… - Nucleic acids …, 2006 - academic.oup.com
Abstract The Chloroplast Genome Database (ChloroplastDB) is an interactive, web-based
database for fully sequenced plastid genomes, containing genomic, protein, DNA and RNA …

[HTML][HTML] CpGDB: a comprehensive database of chloroplast genomes

BP Singh, A Kumar, H Kaur, H Singh, AK Nagpal - Bioinformation, 2020 - ncbi.nlm.nih.gov
Abstract Chloroplast Genome Database (CpGDB) is user friendly, web-based, freely
available and dynamic relational database which provides a platform for researchers to …

Advances in phylogenomics based on complete chloroplast genomes

Z Yun-Jie, LI De-Zhu - Plant Diversity, 2011 - journal.kib.ac.cn
Phylogenomics is a new synthesized discipline which combines genomics with
phylogenetics. Phylogenomics based on chloroplast genomes has shown many great …

Whole genome sequencing of enriched chloroplast DNA using the Illumina GAII platform

RA Atherton, BJ McComish, LD Shepherd, LA Berry… - Plant methods, 2010 - Springer
Background Complete chloroplast genome sequences provide a valuable source of
molecular markers for studies in molecular ecology and evolution of plants. To obtain …

Chloroplast biotechnology, genomics and evolution: current status, challenges and future directions

JL Clarke, H Daniell, JM Nugent - Plant molecular biology, 2011 - Springer
Although the concept of chloroplast transformation was developed two decades ago (Daniell
et al. 2002; Maliga 2004), the enormous biotechnological potential of chloroplast …

Complete Chloroplast Genome of Sedum sarmentosum and Chloroplast Genome Evolution in Saxifragales

W Dong, C Xu, T Cheng, S Zhou - PloS one, 2013 - journals.plos.org
Comparative chloroplast genome analyses are mostly carried out at lower taxonomic levels,
such as the family and genus levels. At higher taxonomic levels, chloroplast genomes are …

An analysis of Echinacea chloroplast genomes: Implications for future botanical identification

N Zhang, DL Erickson, P Ramachandran, AR Ottesen… - Scientific reports, 2017 - nature.com
Echinacea is a common botanical used in dietary supplements, primarily to treat upper
respiratory tract infections and to support immune function. There are currently thought to be …

Complete Sequence and Comparative Analysis of the Chloroplast Genome of Coconut Palm (Cocos nucifera)

YY Huang, AJM Matzke, M Matzke - PLoS One, 2013 - journals.plos.org
Coconut, a member of the palm family (Arecaceae), is one of the most economically
important trees used by mankind. Despite its diverse morphology, coconut is recognized …