Progress in chloroplast genome analysis

S Xing - Progress in Biochemistry and Biophysics, 2006 - pesquisa.bvsalud.org
Being organelles present in higher plants and algae, and containing the entire machinery for
the process of photosynthesis and their own genetic system, chloroplasts have played …

Chloroplast genomes of four Carex species: Long repetitive sequences trigger dramatic changes in chloroplast genome structure

S Xu, K Teng, H Zhang, K Gao, J Wu, L Duan… - Frontiers in Plant …, 2023 - frontiersin.org
The chloroplast genomes of angiosperms usually have a stable circular quadripartite
structure that exhibits high consistency in genome size and gene order. As one of the most …

Comparative Genomic Analysis Uncovers the Chloroplast Genome Variation and Phylogenetic Relationships of Camellia Species

P Lin, H Yin, K Wang, H Gao, L Liu, X Yao - Biomolecules, 2022 - mdpi.com
Camellia is the largest genus in the family Theaceae. Due to phenotypic diversity, frequent
hybridization, and polyploidization, an understanding of the phylogenetic relationships …

The complete chloroplast genome sequence of the medicinal plant Rheum palmatum L. (Polygonaceae)

K Fan, XJ Sun, M Huang, XM Wang - Mitochondrial DNA Part A, 2016 - Taylor & Francis
The complete chloroplast genome of the medicinal plant Rheum palmatum
L.(Polygonaceae) has been reconstructed from the whole-genome Illumina sequencing …

Highly variable chloroplast genome from two endangered Papaveraceae lithophytes Corydalis tomentella and Corydalis saxicola

F Ren, L Wang, Y Li, W Zhuo, Z Xu, H Guo… - Ecology and …, 2021 - Wiley Online Library
The increasingly wide application of chloroplast (cp) genome super‐barcode in taxonomy
and the recent breakthrough in cp genetic engineering make the development of new cp …

Comparative chloroplast genomics: analyses including new sequences from the angiosperms Nuphar advena and Ranunculus macranthus

LA Raubeson, R Peery, TW Chumley, C Dziubek… - BMC genomics, 2007 - Springer
Background The number of completely sequenced plastid genomes available is growing
rapidly. This array of sequences presents new opportunities to perform comparative …

Towards the well-tempered chloroplast DNA sequences

A Turudić, Z Liber, M Grdiša, J Jakše, F Varga… - Plants, 2021 - mdpi.com
With the development of next-generation sequencing technology and bioinformatics tools,
the process of assembling DNA sequences has become cheaper and easier, especially in …

Direct chloroplast sequencing: comparison of sequencing platforms and analysis tools for whole chloroplast barcoding

M Brozynska, A Furtado, RJ Henry - PLoS One, 2014 - journals.plos.org
Direct sequencing of total plant DNA using next generation sequencing technologies
generates a whole chloroplast genome sequence that has the potential to provide a barcode …

Dynamic evolution and phylogenomic analysis of the chloroplast genome in Schisandraceae

B Li, Y Zheng - Scientific Reports, 2018 - nature.com
Chloroplast genomes of plants are highly conserved in both gene order and gene content,
are maternally inherited, and have a lower rate of evolution. Chloroplast genomes are …

Distribution and nomenclature of protein-coding genes in 12 sequenced chloroplast genomes

B Stoebe, W Martin, KV Kowallik - Plant Molecular Biology Reporter, 1998 - Springer
A number of chloroplast genomes have been sequenced and many more are in the pipeline.
We have investigated the information contained in completely sequenced chloroplast …