Development of highly fluorogenic styrene probes for visualizing RNA in live cells
Styrene dyes are useful imaging probes and fluorescent sensors due to their strong
fluorogenic responses to environmental changes or binding macromolecules. Previously …
fluorogenic responses to environmental changes or binding macromolecules. Previously …
Sequence-specific post-synthetic oligonucleotide labeling for single-molecule fluorescence applications
D Egloff, IA Oleinich, M Zhao, SLB Konig… - ACS chemical …, 2016 - ACS Publications
The sequence-specific fluorescence labeling of nucleic acids is a prerequisite for various
methods including single-molecule Förster resonance energy transfer (smFRET) for the …
methods including single-molecule Förster resonance energy transfer (smFRET) for the …
Improved Hydration-Sensitive Dual-Fluorescence Labels For Monitoring Peptide− Nucleic Acid Interactions
OM Zamotaiev, VY Postupalenko… - Bioconjugate …, 2011 - ACS Publications
Environmentally sensitive labels constitute a new, attractive tool for monitoring biomolecular
interactions. 3-Hydroxychromone derivatives are of particular interest because they undergo …
interactions. 3-Hydroxychromone derivatives are of particular interest because they undergo …
Fluorescent indicator displacement assay for ligand− RNA interactions
J Zhang, S Umemoto, K Nakatani - Journal of the American …, 2010 - ACS Publications
Since the discovery of the RNA functions modulating gene expression, functional RNA has
become an attractive drug target. Ligand− RNA interactions have been studied by covalent …
become an attractive drug target. Ligand− RNA interactions have been studied by covalent …
Complete enzymatic digestion of double-stranded RNA to nucleosides enables accurate quantification of dsRNA
SR Strezsak, PJ Beuning, NJ Skizim - Analytical Methods, 2021 - pubs.rsc.org
The rapid growth of research focusing on RNA, especially for RNA interference applications,
has created a need for a robust method that can accurately determine the concentration of …
has created a need for a robust method that can accurately determine the concentration of …
3'Terminal end‐labeling of structured RNA by Klenow DNA polymerase
MN Mwangi, NN Baird - The FASEB Journal, 2022 - Wiley Online Library
RNA labeling is a key step in studying RNA localization, folding, and structural dynamics
using fluorescence based assays. Current methods of fluorophore attachment to long (> 100 …
using fluorescence based assays. Current methods of fluorophore attachment to long (> 100 …
Double FIT hybridization probes–towards enhancing brightness, turn-on and specificity of RNA detection
S Schöllkopf, A Knoll, A Homer, O Seitz - Chemical Science, 2023 - pubs.rsc.org
Efficient fluorogenic hybridization probes combine high brightness and specificity of
fluorescence signaling with large turn-on of fluorescence. Herein, we present an approach …
fluorescence signaling with large turn-on of fluorescence. Herein, we present an approach …
Kinetic analysis of highly effective triplex formation between a small molecule–peptide nucleic acid conjugate probe and the influenza A virus RNA promoter region at …
CU Okeke, H Miura, Y Sato, S Nishizawa - Organic & Biomolecular …, 2023 - pubs.rsc.org
In order to overcome the pH limitations of triplex-forming peptide nucleic acid (PNA) in
binding to double-stranded RNA (dsRNA), we have recently proposed a new design of …
binding to double-stranded RNA (dsRNA), we have recently proposed a new design of …
RNA “Traffic lights”: An analytical tool to monitor siRNA integrity
C Holzhauser, R Liebl, A Goepferich… - ACS chemical …, 2013 - ACS Publications
The combination of thiazole orange and thiazole red as an internal energy transfer-based
fluorophore pair in oligonucleotides provides an outstanding analytical tool to follow …
fluorophore pair in oligonucleotides provides an outstanding analytical tool to follow …
Synthesis and application of a 19 F-labeled fluorescent nucleoside as a dual-mode probe for i-motif DNAs
WA Wee, JH Yum, S Hirashima, H Sugiyama… - RSC Chemical …, 2021 - pubs.rsc.org
Because of their stable orientations and their minimal interference with native DNA
interactions and folding, emissive isomorphic nucleoside analogues are versatile tools for …
interactions and folding, emissive isomorphic nucleoside analogues are versatile tools for …