Evolutionary dynamics of transposable elements and satellite DNAs in polyploid Spartina species

D Giraud, O Lima, V Huteau, O Coriton, J Boutte… - Plant science, 2021 - Elsevier
Repeated sequences and polyploidy play a central role in plant genome dynamics. Here,
we analyze the evolutionary dynamics of repeats in tetraploid and hexaploid Spartina …

[HTML][HTML] Gene and transposable element expression evolution following recent and past polyploidy events in Spartina (Poaceae)

D Giraud, O Lima, M Rousseau-Gueutin… - Frontiers in …, 2021 - frontiersin.org
Gene expression dynamics is a key component of polyploid evolution, varying in nature,
intensity, and temporal scales, most particularly in allopolyploids, where two or more sub …

Hybridization, polyploidy and invasion: lessons from Spartina (Poaceae)

ML Aïnouche, PM Fortune, A Salmon, C Parisod… - Biological …, 2009 - Springer
In this paper, we examine how the Spartina system has helped our understanding of the
genomic aspects of allopolyploid speciation in the context of biological invasion. More …

Rapid structural and epigenetic reorganization near transposable elements in hybrid and allopolyploid genomes in Spartina

C Parisod, A Salmon, T Zerjal, M Tenaillon… - New …, 2009 - Wiley Online Library
Transposable elements (TE) induce structural and epigenetic alterations in their host
genome, with major evolutionary implications. These alterations are examined here in the …

Genetic and epigenetic consequences of recent hybridization and polyploidy in Spartina (Poaceae)

A Salmon, ML Ainouche, JF Wendel - Molecular ecology, 2005 - Wiley Online Library
To study the consequences of hybridization and genome duplication on polyploid genome
evolution and adaptation, we used independently formed hybrids (Spartina× townsendii and …

Erratum From—Polyploid Evolution in Spartina: Dealing with Highly Redundant Hybrid Genomes

M Ainouche, H Chelaifa, J Ferreira, S Bellot… - Polyploidy and genome …, 2012 - Springer
Polyploidy and recurrent interspecific hybridization represent major features of Spartina
evolution, resulting in several superimposed divergent genomes that coexist in the currently …

Gene expression variation in natural populations of hexaploid and allododecaploid Spartina species (Poaceae)

J Ferreira de Carvalho, J Boutte, P Bourdaud… - Plant Systematics and …, 2017 - Springer
Allopolyploidy is a peculiar process entailing the cohabitation of two (or more) divergent
genomes. Consequences on plant genomes are varied and can utlimately alter gene …

Flow cytometry and GISH reveal mixed ploidy populations and Spartina nonaploids with genomes of S. alterniflora and S. maritima origin

S Renny-Byfield, M Ainouche, IJ Leitch, KY Lim… - Annals of …, 2010 - academic.oup.com
Abstract Background The genus Spartina exhibits extensive hybridization and includes
classic examples of recent speciation by allopolyploidy. In the UK there are two hexaploid …

Retrotransposons and Genomic Stability in Populations of the Young Allopolyploid Species Spartina anglica CE Hubbard (Poaceae)

A Baumel, M Ainouche, R Kalendar… - … Biology and Evolution, 2002 - academic.oup.com
Spartina× townsendii arose during the end of the 19th century in England by hybridization
between the indigenous Spartina maritima and the introduced Spartina alterniflora, native to …

Reference Transcriptomes and Detection of Duplicated Copies in Hexaploid and Allododecaploid Spartina Species (Poaceae)

J Boutte, J Ferreira de Carvalho… - Genome Biology and …, 2016 - academic.oup.com
In this study, we report the assembly and annotation of five reference transcriptomes for the
European hexaploid Spartina species (S. maritima, S. alterniflora and their homoploid …