Computational methods for identifying the critical nodes in biological networks

X Liu, Z Hong, J Liu, Y Lin… - Briefings in …, 2020 - academic.oup.com
A biological network is complex. A group of critical nodes determines the quality and state of
such a network. Increasing studies have shown that diseases and biological networks are …

A mini review of node centrality metrics in biological networks

M Wang, H Wang, H Zheng - International Journal of Network …, 2022 - pure.ulster.ac.uk
The diversity of nodes in a complex network causes each node to have varying significance,
and the important nodes often have a significant impact on the structure and function of the …

Identifying critical nodes in protein-protein interaction networks

V Boginski, CW Commander - Clustering challenges in biological …, 2009 - World Scientific
In recent years, the study of biological networks has increased dramatically. These problems
have piqued the interest of researchers in many disciplines from biology to mathematics. In …

Statistical identification of important nodes in biological systems

P Wang - Journal of systems science and complexity, 2021 - Springer
Biological systems can be modeled and described by biological networks. Biological
networks are typical complex networks with widely real-world applications. Many problems …

[HTML][HTML] A guide to conquer the biological network era using graph theory

M Koutrouli, E Karatzas, D Paez-Espino… - … in bioengineering and …, 2020 - frontiersin.org
Networks are one of the most common ways to represent biological systems as complex sets
of binary interactions or relations between different bioentities. In this article, we discuss the …

[HTML][HTML] A generic algorithm for layout of biological networks

F Schreiber, T Dwyer, K Marriott, M Wybrow - BMC bioinformatics, 2009 - Springer
Background Biological networks are widely used to represent processes in biological
systems and to capture interactions and dependencies between biological entities. Their …

Algorithmic and analytical methods in network biology

M Koyutürk - Wiley Interdisciplinary Reviews: Systems Biology …, 2010 - Wiley Online Library
During the genomic revolution, algorithmic and analytical methods for organizing,
integrating, analyzing, and querying biological sequence data proved invaluable. Today …

[HTML][HTML] Identification of important nodes in directed biological networks: A network motif approach

P Wang, J Lü, X Yu - PloS one, 2014 - journals.plos.org
Identification of important nodes in complex networks has attracted an increasing attention
over the last decade. Various measures have been proposed to characterize the importance …

[图书][B] Statistical and machine learning approaches for network analysis

M Dehmer, SC Basak - 2012 - Wiley Online Library
An emerging trend in many scientific disciplines is a strong tendency toward being
transformed into some form of information science. One important pathway in this transition …

Computing topological parameters of biological networks

Y Assenov, F Ramírez, SE Schelhorn… - …, 2008 - academic.oup.com
Rapidly increasing amounts of molecular interaction data are being produced by various
experimental techniques and computational prediction methods. In order to gain insight into …