05. The relationship between codon usage bias and salt resistant genes in Arabidopsis thaliana and Oryza sativa

MYK Barozai, AG Kakar, M Din - Pure and Applied Biology (PAB), 2021 - thepab.org
This research is based on synonymous codon usage and its relation with the salt resistant
genes. The codon usage directly affects the level or even direction of changes in protein …

[HTML][HTML] Stress induced MAPK genes show distinct pattern of codon usage in Arabidopsis thaliana, Glycine max and Oryza sativa

HS Singha, S Chakraborty, H Deka - Bioinformation, 2014 - ncbi.nlm.nih.gov
Mitogen activated protein kinase (MAPK) genes provide resistance to various biotic and
abiotic stresses. Codon usage profiling of the genes reveals the characteristic features of the …

03. Codon usage bias and RNA secondary structures analysis for virus resistant genes in Arabidopsis thaliana and Oryza sativa

MYK Barozai, S Qasim, M Din… - Pure and Applied Biology …, 2021 - thepab.org
The current study is based upon the relationship of the codon usage bias (CUB) and RNA
secondary structures (RSS) analysis between virus resistant (biotic stress) and …

The relationship of Synonymous Codon Usage Bias analyses of stress resistant and reference genes in significant species of plants.

SQ Shah, N Khan, SU Ahmad, Z Bashir, T Mahmood - 2021 - cabidigitallibrary.org
Abstract The Synonymous Codon Usage Bias (SCUB) corresponds to the difference in the
expression level of a gene that interrupts the quantity of proteins and varies the expression …

Codon usage provide insights into the adaptation of rice genes under stress condition

S Tyagi, PG Kabade, N Gnanapragasam… - International Journal of …, 2023 - mdpi.com
Plants experience different stresses, ie, abiotic, or biotic, and to combat them, plants re-
program the expression of growth-, metabolism-, and resistance-related genes. These …

Patterns of genome-wide codon usage bias in tobacco, tomato and potato

AM Anwar, M Aljabri, M El-Soda - … & Biotechnological Equipment, 2021 - Taylor & Francis
Understanding codon usage patterns and their shaping factors in members of the
Solanaceae family may reflect important features of their evolutionary history. Here, we …

Deciphering codon usage patterns and evolutionary forces in chloroplast genes of Camellia sinensis var. assamica and Camellia sinensis var. sinensis in comparison …

S Yengkhom, A Uddin, S Chakraborty - Journal of Integrative Agriculture, 2019 - Elsevier
Codon usage bias (CUB) is a unique property of genome which refers to non-random usage
of synonymous codons in coding sequences. The present study makes an attempt to find out …

Environmental implications of codon usage bias in Crocus sativus and its impact on host pathogen interactions

S Nisa, S Gupta, W Ahmed, R Singh - Rhizosphere, 2024 - Elsevier
Codon usage bias (CUB) is a ubiquitous phenomenon perseveres in genome of all the
organisms. It impinges the gene expression and other genetic intricacies within a genome …

Synonymous codon usage bias in Oryza sativa

Q Liu, Y Feng, H Dong, Q Xue - Plant Science, 2004 - Elsevier
By using 1860 cDNA sequences containing complete coding sequence (CDS), a detailed
analysis of the effects of several factors on codon usage in rice was performed. The results …

Comparative analysis of codon usage patterns in chloroplast genomes of the Asteraceae family

X Nie, P Deng, K Feng, P Liu, X Du, FM You… - Plant molecular biology …, 2014 - Springer
Codon usage bias (CUB) is an important evolutionary feature in a genome and has been
widely documented from prokaryotes to eukaryotes. However, the significance of CUB in the …