[HTML][HTML] FunOMIC: Pipeline with built-in fungal taxonomic and functional databases for human mycobiome profiling

Z Xie, C Manichanh - Computational and structural biotechnology journal, 2022 - Elsevier
While analysis of the bacterial microbiome has become routine, that of the fungal
microbiome is still hampered by the lack of robust databases and bioinformatic pipelines …

Fungal genomes and genotyping

R Araujo, B Sampaio-Maia - Advances in applied microbiology, 2018 - Elsevier
The availability of complete fungal genomes is expanding rapidly and is offering an
extensive and accurate view of this “kingdom.” The scientific milestone of free access to …

[HTML][HTML] Dimensions of genome dynamics in fungal pathogens: from fundamentals to applications

D Croll - BMC biology, 2024 - Springer
Fungi are ubiquitous in most ecosystems and are at the origin of serious pathogen
outbreaks in humans and crops. Investigation of pathogen genomes over the past decade …

Complex fungi

U Kües, W Khonsuntia, S Subba - Fungal Biology Reviews, 2018 - Elsevier
Filamentous fungi grow in form of multicellular tubular hyphae ('simple multicellularity').
When hyphae aggregate, more complex three-dimensional structures emerge …

Comparative genome analysis across a kingdom of eukaryotic organisms: specialization and diversification in the fungi

MJ Cornell, I Alam, DM Soanes, HM Wong… - Genome …, 2007 - genome.cshlp.org
The recent proliferation of genome sequencing in diverse fungal species has provided the
first opportunity for comparative genome analysis across a eukaryotic kingdom. Here, we …

[HTML][HTML] Special Issue “Genomics of Fungal Plant Pathogens”

B Wang, YS Abubakar, Z Wang - Journal of Fungi, 2023 - mdpi.com
Plant diseases can be classified according to pathogenic organisms, and 70–80% of them
are fungal diseases. Fungal diseases cause a significant reduction in crop yield and quality …

FTFD: an informatics pipeline supporting phylogenomic analysis of fungal transcription factors

J Park, J Park, S Jang, S Kim, S Kong, J Choi… - …, 2008 - academic.oup.com
Genomes of more than 60 fungal species have been sequenced to date, yet there has been
no systematic approach to analyze fungal transcription factors (TFs) kingdom widely. We …

[HTML][HTML] Fungal transcriptomics

V Bhadauria, L Popescu, WS Zhao, YL Peng - Microbiological Research, 2007 - Elsevier
We have now entered in the post-genomic era, where we have knowledge of plethora of
fungal genomes and cutting edge technology is available to study global mRNA, protein and …

[引用][C] The ecological genomics of fungi.

F Martin - 2014 - cabidigitallibrary.org
This unique book covers a broad diversity of fungal systems and provides unique insight into
the functions of those fungi in various ecosystems-from soil, to plant, to human. Bringing …

Putting It All Together: The Design of a Pipeline for Genome-Wide Functional Annotation of Fungi in the Modern Era of “-Omics” Data and Systems Biology

G Butler - International Conference on Data Integration in the Life …, 2013 - Springer
The context for bioinformatics continues to change as new technology brings more varied
data in greater volume. We present the preliminary design of a pipeline for functional …