[HTML][HTML] FunOMIC: Pipeline with built-in fungal taxonomic and functional databases for human mycobiome profiling
Z Xie, C Manichanh - Computational and structural biotechnology journal, 2022 - Elsevier
While analysis of the bacterial microbiome has become routine, that of the fungal
microbiome is still hampered by the lack of robust databases and bioinformatic pipelines …
microbiome is still hampered by the lack of robust databases and bioinformatic pipelines …
Fungal genomes and genotyping
R Araujo, B Sampaio-Maia - Advances in applied microbiology, 2018 - Elsevier
The availability of complete fungal genomes is expanding rapidly and is offering an
extensive and accurate view of this “kingdom.” The scientific milestone of free access to …
extensive and accurate view of this “kingdom.” The scientific milestone of free access to …
[HTML][HTML] Dimensions of genome dynamics in fungal pathogens: from fundamentals to applications
D Croll - BMC biology, 2024 - Springer
Fungi are ubiquitous in most ecosystems and are at the origin of serious pathogen
outbreaks in humans and crops. Investigation of pathogen genomes over the past decade …
outbreaks in humans and crops. Investigation of pathogen genomes over the past decade …
Complex fungi
Filamentous fungi grow in form of multicellular tubular hyphae ('simple multicellularity').
When hyphae aggregate, more complex three-dimensional structures emerge …
When hyphae aggregate, more complex three-dimensional structures emerge …
Comparative genome analysis across a kingdom of eukaryotic organisms: specialization and diversification in the fungi
MJ Cornell, I Alam, DM Soanes, HM Wong… - Genome …, 2007 - genome.cshlp.org
The recent proliferation of genome sequencing in diverse fungal species has provided the
first opportunity for comparative genome analysis across a eukaryotic kingdom. Here, we …
first opportunity for comparative genome analysis across a eukaryotic kingdom. Here, we …
[HTML][HTML] Special Issue “Genomics of Fungal Plant Pathogens”
B Wang, YS Abubakar, Z Wang - Journal of Fungi, 2023 - mdpi.com
Plant diseases can be classified according to pathogenic organisms, and 70–80% of them
are fungal diseases. Fungal diseases cause a significant reduction in crop yield and quality …
are fungal diseases. Fungal diseases cause a significant reduction in crop yield and quality …
FTFD: an informatics pipeline supporting phylogenomic analysis of fungal transcription factors
Genomes of more than 60 fungal species have been sequenced to date, yet there has been
no systematic approach to analyze fungal transcription factors (TFs) kingdom widely. We …
no systematic approach to analyze fungal transcription factors (TFs) kingdom widely. We …
[HTML][HTML] Fungal transcriptomics
V Bhadauria, L Popescu, WS Zhao, YL Peng - Microbiological Research, 2007 - Elsevier
We have now entered in the post-genomic era, where we have knowledge of plethora of
fungal genomes and cutting edge technology is available to study global mRNA, protein and …
fungal genomes and cutting edge technology is available to study global mRNA, protein and …
[引用][C] The ecological genomics of fungi.
F Martin - 2014 - cabidigitallibrary.org
This unique book covers a broad diversity of fungal systems and provides unique insight into
the functions of those fungi in various ecosystems-from soil, to plant, to human. Bringing …
the functions of those fungi in various ecosystems-from soil, to plant, to human. Bringing …
Putting It All Together: The Design of a Pipeline for Genome-Wide Functional Annotation of Fungi in the Modern Era of “-Omics” Data and Systems Biology
G Butler - International Conference on Data Integration in the Life …, 2013 - Springer
The context for bioinformatics continues to change as new technology brings more varied
data in greater volume. We present the preliminary design of a pipeline for functional …
data in greater volume. We present the preliminary design of a pipeline for functional …