The 2008 update of the Aspergillus nidulans genome annotation: a community effort

JR Wortman, JM Gilsenan, V Joardar, J Deegan… - Fungal Genetics and …, 2009 - Elsevier
The identification and annotation of protein-coding genes is one of the primary goals of
whole-genome sequencing projects, and the accuracy of predicting the primary protein …

Fungi. guru: comparative genomic and transcriptomic database for the Fungi kingdom

JJJ Lim, J Koh, JR Moo, EMF Villanueva, DA Putri… - bioRxiv, 2020 - biorxiv.org
The fungi kingdom is composed of eukaryotic heterotrophs, which are responsible for
balancing the ecosystem and play a major role as decomposers. They also produce a vast …

OcculterCut: a comprehensive survey of AT-rich regions in fungal genomes

AC Testa, RP Oliver, JK Hane - Genome biology and evolution, 2016 - academic.oup.com
We present a novel method to measure the local GC-content bias in genomes and a survey
of published fungal species. The method, enacted as “OcculterCut”(https://sourceforge …

Genomics in fungal pathogenesis

JL Beckerman, PT Magee - Fungal Pathogenesis: Principles and …, 2001 - books.google.com
By the end of the year 2000, completed genome sequences of over 75 micro-organisms will
be available. Although the majority of sequenced genomes will be prokaryotic, fungal …

[HTML][HTML] Improving taxonomic delimitation of fungal species in the age of genomics and phenomics

A Stengel, KM Stanke, AC Quattrone… - Frontiers in …, 2022 - frontiersin.org
Species concepts have long provided a source of debate among biologists. These lively
debates have been important for reaching consensus on how to communicate across …

Proteome studies of filamentous fungi

SE Baker, EA Panisko - Fungal Genomics: Methods and Protocols, 2011 - Springer
The continued fast pace of fungal genome sequence generation has enabled proteomic
analysis of a wide variety of organisms that span the breadth of the Kingdom Fungi. There is …

[HTML][HTML] Systems Biology in Fungal Research

J Geddes-McAlister - Journal of Fungi, 2022 - mdpi.com
The beauty within biological systems can be uncovered using a variety of advanced
technological platforms for in-depth profiling. Improvements in genome, transcriptome …

[HTML][HTML] SNUGB: a versatile genome browser supporting comparative and functional fungal genomics

K Jung, J Park, J Choi, B Park, S Kim, K Ahn, J Choi… - BMC genomics, 2008 - Springer
Background Since the full genome sequences of Saccharomyces cerevisiae were released
in 1996, genome sequences of over 90 fungal species have become publicly available. The …

TaF: a web platform for taxonomic profile-based fungal gene prediction

SG Park, DS Ryu, H Lee, H Ryu, YJ Ahn, S Yoo, J Ko… - Genes & genomics, 2019 - Springer
Introduction The accurate prediction and annotation of gene structures from the genome
sequence of an organism enable genome-wide functional analyses to obtain insight into the …

PhytoPath: an integrative resource for plant pathogen genomics

H Pedro, U Maheswari, M Urban, AG Irvine… - Nucleic Acids …, 2016 - academic.oup.com
Abstract PhytoPath (www. phytopathdb. org) is a resource for genomic and phenotypic data
from plant pathogen species, that integrates phenotypic data for genes from PHI-base, an …