The 2008 update of the Aspergillus nidulans genome annotation: a community effort
The identification and annotation of protein-coding genes is one of the primary goals of
whole-genome sequencing projects, and the accuracy of predicting the primary protein …
whole-genome sequencing projects, and the accuracy of predicting the primary protein …
Fungi. guru: comparative genomic and transcriptomic database for the Fungi kingdom
JJJ Lim, J Koh, JR Moo, EMF Villanueva, DA Putri… - bioRxiv, 2020 - biorxiv.org
The fungi kingdom is composed of eukaryotic heterotrophs, which are responsible for
balancing the ecosystem and play a major role as decomposers. They also produce a vast …
balancing the ecosystem and play a major role as decomposers. They also produce a vast …
OcculterCut: a comprehensive survey of AT-rich regions in fungal genomes
We present a novel method to measure the local GC-content bias in genomes and a survey
of published fungal species. The method, enacted as “OcculterCut”(https://sourceforge …
of published fungal species. The method, enacted as “OcculterCut”(https://sourceforge …
Genomics in fungal pathogenesis
JL Beckerman, PT Magee - Fungal Pathogenesis: Principles and …, 2001 - books.google.com
By the end of the year 2000, completed genome sequences of over 75 micro-organisms will
be available. Although the majority of sequenced genomes will be prokaryotic, fungal …
be available. Although the majority of sequenced genomes will be prokaryotic, fungal …
[HTML][HTML] Improving taxonomic delimitation of fungal species in the age of genomics and phenomics
A Stengel, KM Stanke, AC Quattrone… - Frontiers in …, 2022 - frontiersin.org
Species concepts have long provided a source of debate among biologists. These lively
debates have been important for reaching consensus on how to communicate across …
debates have been important for reaching consensus on how to communicate across …
Proteome studies of filamentous fungi
SE Baker, EA Panisko - Fungal Genomics: Methods and Protocols, 2011 - Springer
The continued fast pace of fungal genome sequence generation has enabled proteomic
analysis of a wide variety of organisms that span the breadth of the Kingdom Fungi. There is …
analysis of a wide variety of organisms that span the breadth of the Kingdom Fungi. There is …
[HTML][HTML] Systems Biology in Fungal Research
J Geddes-McAlister - Journal of Fungi, 2022 - mdpi.com
The beauty within biological systems can be uncovered using a variety of advanced
technological platforms for in-depth profiling. Improvements in genome, transcriptome …
technological platforms for in-depth profiling. Improvements in genome, transcriptome …
[HTML][HTML] SNUGB: a versatile genome browser supporting comparative and functional fungal genomics
Background Since the full genome sequences of Saccharomyces cerevisiae were released
in 1996, genome sequences of over 90 fungal species have become publicly available. The …
in 1996, genome sequences of over 90 fungal species have become publicly available. The …
TaF: a web platform for taxonomic profile-based fungal gene prediction
Introduction The accurate prediction and annotation of gene structures from the genome
sequence of an organism enable genome-wide functional analyses to obtain insight into the …
sequence of an organism enable genome-wide functional analyses to obtain insight into the …
PhytoPath: an integrative resource for plant pathogen genomics
Abstract PhytoPath (www. phytopathdb. org) is a resource for genomic and phenotypic data
from plant pathogen species, that integrates phenotypic data for genes from PHI-base, an …
from plant pathogen species, that integrates phenotypic data for genes from PHI-base, an …