Structural basis for specific DNA sequence motif recognition by the TFAP2 transcription factors
K Liu, Y Xiao, L Gan, W Li, J Zhang… - Nucleic Acids …, 2023 - academic.oup.com
The TFAP2 family regulates gene expression during differentiation, development, and
organogenesis, and includes five homologs in humans. They all possess a highly conserved …
organogenesis, and includes five homologs in humans. They all possess a highly conserved …
Genome-wide targeting of the epigenetic regulatory protein CTCF to gene promoters by the transcription factor TFII-I
R Peña-Hernández, M Marques… - Proceedings of the …, 2015 - National Acad Sciences
CCCTC-binding factor (CTCF) is a key regulator of nuclear chromatin structure and gene
regulation. The impact of CTCF on transcriptional output is highly varied, ranging from …
regulation. The impact of CTCF on transcriptional output is highly varied, ranging from …
Interaction of the CNC-bZIP factor TCF11/LCR-F1/Nrf1 with MafG: binding-site selection and regulation of transcription
Ø Johnsen, P Murphy, H Prydz… - Nucleic acids …, 1998 - academic.oup.com
We have previously shown that the widely expressed human transcription factor TCF11/LCR-
F1/Nrf1 interacts with small Maf proteins and binds to a subclass of AP1-sites. Such sites are …
F1/Nrf1 interacts with small Maf proteins and binds to a subclass of AP1-sites. Such sites are …
Identification of the single-stranded DNA binding surface of the transcriptional coactivator PC4 by NMR
S Werten, R Wechselberger, R Boelens… - Journal of Biological …, 1999 - ASBMB
The C-terminal domain of the eukaryotic transcriptional cofactor PC4 (PC4 CTD) is known to
bind with nanomolar affinity to single-stranded (ss) DNA. Here, NMR is used to study DNA …
bind with nanomolar affinity to single-stranded (ss) DNA. Here, NMR is used to study DNA …
RNA interactions with CTCF are essential for its proper function
R Saldaña-Meyer, J Rodriguez-Hernaez, M Nishana… - biorxiv, 2019 - biorxiv.org
The function of the CCCTC-binding factor (CTCF) in the organization of the genome has
become an important area of investigation, but the mechanisms of how CTCF dynamically …
become an important area of investigation, but the mechanisms of how CTCF dynamically …
5-Hydroxymethylcytosine in E-box motifs ACAT| GTG and ACAC| GTG increases DNA-binding of the B-HLH transcription factor TCF4
We evaluated DNA binding of the B-HLH family members TCF4 and USF1 using protein
binding microarrays (PBMs) containing double-stranded DNA probes with cytosine on both …
binding microarrays (PBMs) containing double-stranded DNA probes with cytosine on both …
Promoter-proximal CTCF binding promotes distal enhancer-dependent gene activation
N Kubo, H Ishii, X Xiong, S Bianco… - Nature structural & …, 2021 - nature.com
The CCCTC-binding factor (CTCF) works together with the cohesin complex to drive the
formation of chromatin loops and topologically associating domains, but its role in gene …
formation of chromatin loops and topologically associating domains, but its role in gene …
[PDF][PDF] New insights into genome structure: genes of a feather stick together
DNA structuring proteins such as CTCF facilitate DNA loop formation and are presumed to
be among the major determinants of eukaryotic genome structure. Recent studies, including …
be among the major determinants of eukaryotic genome structure. Recent studies, including …
The Brf1 and Bdp1 subunits of transcription factor TFIIIB bind to overlapping sites in the tetratricopeptide repeats of Tfc4
Y Liao, IM Willis, RD Moir - Journal of Biological Chemistry, 2003 - ASBMB
The RNA polymerase III initiation factor TFIIIB is assembled onto DNA through interactions
involving the Tfc4 subunit of the assembly factor TFIIIC and two subunits of TFIIIB, Brf1 and …
involving the Tfc4 subunit of the assembly factor TFIIIC and two subunits of TFIIIB, Brf1 and …
CTCF regulates the local epigenetic state of ribosomal DNA repeats
S van de Nobelen, M Rosa-Garrido, J Leers… - Epigenetics & …, 2010 - Springer
Background CCCTC binding factor (CTCF) is a highly conserved zinc finger protein, which is
involved in chromatin organization, local histone modifications, and RNA polymerase II …
involved in chromatin organization, local histone modifications, and RNA polymerase II …