Patient-specific Boolean models of signalling networks guide personalised treatments

A Montagud, J Béal, L Tobalina, P Traynard… - Elife, 2022 - elifesciences.org
Prostate cancer is the second most occurring cancer in men worldwide. To better
understand the mechanisms of tumorigenesis and possible treatment responses, we …

Patient‐specific logic models of signaling pathways from screenings on cancer biopsies to prioritize personalized combination therapies

F Eduati, P Jaaks, J Wappler, T Cramer… - Molecular systems …, 2020 - embopress.org
Mechanistic modeling of signaling pathways mediating patient‐specific response to therapy
can help to unveil resistance mechanisms and improve therapeutic strategies. Yet, creating …

Gene expression based inference of cancer drug sensitivity

S Chawla, A Rockstroh, M Lehman, E Ratther… - Nature …, 2022 - nature.com
Inter and intra-tumoral heterogeneity are major stumbling blocks in the treatment of cancer
and are responsible for imparting differential drug responses in cancer patients. Recently …

[PDF][PDF] Predicting drug response in human prostate cancer from preclinical analysis of in vivo mouse models

A Mitrofanova, A Aytes, M Zou, MM Shen… - Cell reports, 2015 - cell.com
Although genetically engineered mouse (GEM) models are often used to evaluate cancer
therapies, extrapolation of such preclinical data to human cancer can be challenging. Here …

Executable cancer models: successes and challenges

MA Clarke, J Fisher - Nature Reviews Cancer, 2020 - nature.com
Making decisions on how best to treat cancer patients requires the integration of different
data sets, including genomic profiles, tumour histopathology, radiological images, proteomic …

Patient-derived models reveal impact of the tumor microenvironment on therapeutic response

AA Shafi, MJ Schiewer, R de Leeuw, E Dylgjeri… - European urology …, 2018 - Elsevier
Background Androgen deprivation therapy is a first-line treatment for disseminated prostate
cancer (PCa). However, virtually all tumors become resistant and recur as castration …

[PDF][PDF] Efficient parameter estimation enables the prediction of drug response using a mechanistic pan-cancer pathway model

F Fröhlich, T Kessler, D Weindl, A Shadrin… - Cell systems, 2018 - cell.com
Mechanistic models are essential to deepen the understanding of complex diseases at the
molecular level. Nowadays, high-throughput molecular and phenotypic characterizations …

Modeling cancer drug response through drug-specific informative genes

L Parca, G Pepe, M Pietrosanto, G Galvan, L Galli… - Scientific reports, 2019 - nature.com
Recent advances in pharmacogenomics have generated a wealth of data of different types
whose analysis have helped in the identification of signatures of different cellular …

A QSP model of prostate cancer immunotherapy to identify effective combination therapies

R Coletti, L Leonardelli, S Parolo, L Marchetti - Scientific reports, 2020 - nature.com
Immunotherapy, by enhancing the endogenous anti-tumor immune responses, is showing
promising results for the treatment of numerous cancers refractory to conventional therapies …

Discovery of therapeutic agents for prostate cancer using genome-scale metabolic modeling and drug repositioning

B Turanli, C Zhang, W Kim, R Benfeitas, M Uhlen… - …, 2019 - thelancet.com
Background Genome-scale metabolic models (GEMs) offer insights into cancer metabolism
and have been used to identify potential biomarkers and drug targets. Drug repositioning is …