[HTML][HTML] Pan-transcriptome identifying master genes and regulation network in response to drought and salt stresses in Alfalfa (Medicago sativa L.)

CA Medina, DA Samac, LX Yu - Scientific reports, 2021 - nature.com
splicing pattern as predicted in the reference genome. Isoforms belong to NNIC, isoforms with
novel splice … , demonstrating the usefulness of Iso-Seq to discover new isoforms in alfalfa. …

Reference nodule transcriptomes for Melilotus officinalis and Medicago sativa cv. Algonquin

R Huang, WA Snedden, GC Dicenzo - Plant Direct, 2022 - Wiley Online Library
… Contigs expected to represent splice variants of a single gene were merged into so-called
“supertranscripts” using the SuperTranscripts program, resulting in compressed assemblies of …

[HTML][HTML] Genome-wide investigation of the ZF-HD gene family in two varieties of alfalfa (Medicago sativa L.) and its expression pattern under alkaline stress

K He, C Li, Z Zhang, L Zhan, C Cong, D Zhang, H Cai - Bmc Genomics, 2022 - Springer
… of the gene encoding calmodulin isoform 4 (GmCaM4) and are … Alfalfa (Medicago sativa L.)
is the major forage protein … 1 were identified (only the longest splice variant was reserved at …

[HTML][HTML] Comparative Transcriptome Analysis Reveals New Insight of Alfalfa (Medicago sativa L.) Cultivars in Response to Abrupt Freezing Stress

X Wang, W Kang, F Wu, J Miao, S Shi - Frontiers in Plant Science, 2022 - frontiersin.org
… Freezing stress is a major limiting environmental factor that affects the productivity and
distribution of alfalfa (Medicago sativa L.). There is growing evidence that enhancing freezing …

[HTML][HTML] Comparative Analysis of Chloroplast Pan-Genomes and Transcriptomics Reveals Cold Adaptation in Medicago sativa

T Zhang, X Chen, W Yan, M Li, W Huang, Q Liu… - International Journal of …, 2024 - mdpi.com
… Alfalfa (Medicago sativa) is a perennial forage legume that is … The huge number of genetic
variants in this study provide … [72] and then spliced with GATK software (version 4.4.0.0) to …

The mutagenic effect of cold plasma on Medicago sativa L.

F Xu, H Chen, C Chen, J Liu, Z Song, C Ding - Free Radical Biology and …, 2024 - Elsevier
… sites was significantly greater than for other types of variants, and the number of SNP sites
was significantly greater than for other types of variants, which were indels, SVs, and CNVs. …

Deciphering the regulatory network of miR156 in plant architecture and abiotic stress resistance of alfalfa (Medicago sativa) by transcriptome sequencing

H Zhang, S Jia, M Zhang, K Wang, F Teng, Y Liu… - Industrial Crops and …, 2022 - Elsevier
… To improve alfalfa (Medicago sativa) biomass yield and abiotic stress resistance is a …
sativa cultivar "Zhongmu No.1". A total of 163,976 alternative splicing events and 9486 gene …

[HTML][HTML] Identification of tissue-specific and cold-responsive lncRNAs in Medicago truncatula by high-throughput RNA sequencing

M Zhao, T Wang, T Sun, X Yu, R Tian, WH Zhang - BMC plant biology, 2020 - Springer
… related to the common legume forage alfalfa (Medicago sativa), it is a valuable material to
… quantitate full-length transcripts representing multiple splice variants for each gene locus. …

Formation and Comparative Analysis of Full-Length Transcriptome Sequencing and Next Generation Sequencing In Medicago Sativa L. Roots Under Abiotic Stress

Z Fang, Y Shi, X Wu, B Ren, Y Zhang, P Guo, H Chi… - 2021 - researchsquare.com
… Alternative splicing and SSR analyses and the … isoforms (average consensus isoform read
length of 2,077), 41,248 polished highquality isoforms, 152,636 polished low-quality isoforms; …

Alternative splicing shapes the transcriptome complexity in blackgram [Vigna mungo (L.) Hepper]

A Hazra, A Pal, A Kundu - Functional & Integrative Genomics, 2023 - Springer
… Enrichment analysis revealed their involvement in diverse regulatory functions and
demonstrated that transcription factors are splicing-intensive, splice variants of which are expressed …