Assembly of microarrays for genome-wide measurement of DNA copy number

AM Snijders, N Nowak, R Segraves, S Blackwood… - Nature …, 2001 - nature.com
assembled arrays of approximately 2,400 BAC clones for measurement of DNA copy number
… The arrays provide precise measurement (sd of log 2 ratios=0.05–0.10) in cell lines and …

Genome-wide analysis of DNA copy-number changes using cDNA microarrays

JR Pollack, CM Perou, AA Alizadeh, MB Eisen… - Nature …, 1999 - nature.com
… used to measure DNA copy-number changes by cDNA microarray hybridization. Genomic
… ) and grew them according to the manufacturer's instructions. We snap froze primary breast …

Methods and strategies for analyzing copy number variation using DNA microarrays

NP Carter - Nature genetics, 2007 - nature.com
… assay DNA in this intermediate size range, DNA microarraysmicroarray technologies being
used for genome-wide CNV … -insert clone libraries were developed and clones assembled

Genome-wide copy number profiling on high-density bacterial artificial chromosomes, single-nucleotide polymorphisms, and oligonucleotide microarrays: a platform …

JY Hehir-Kwa, M Egmont-Petersen, IM Janssen… - DNA …, 2007 - academic.oup.com
… a genome-wide probability that a copy-number variation with a particular size independent of
… minimally required sample size, we obtained an objective genome-wide resolution statistic. …

High resolution analysis of DNA copy number variation using comparative genomic hybridization to microarrays

D Pinkel, R Segraves, D Sudar, S Clark, I Poole… - Nature …, 1998 - nature.com
… for genome-wide analysis of DNA sequence copy number in … We demonstrate its ability to
measure copy number with high … (12162) following the instructions of the manufacturer, except …

Gene-resolution analysis of DNA copy number variation using oligonucleotide expression microarrays

H Auer, DL Newsom, NJ Nowak, KM McHugh, S Singh… - BMC genomics, 2007 - Springer
… method for measuring genome-wide DNA copy number changes. … Since BAC aCGH microarray
and the graCNV microarray (… genome assembly version 35, coordinates of copy number

High-resolution analysis of DNA copy number using oligonucleotide microarrays

GR Bignell, J Huang, J Greshock, S Watt… - Genome …, 2004 - genome.cshlp.org
… an ABI 3700 or ABI 3100 DNA analyzer as per the manufacturer's instructions. The data were
… estimation was calculated using the standard curve method for relative quantitation using …

Whole genome DNA copy number changes identified by high density oligonucleotide arrays

J Huang, W Wei, J Zhang, G Liu, GR Bignell… - Human genomics, 2004 - Springer
… specified in the manufacturer's instructions. Samples comprising … measurements with
genome-wide copy number profiling. … for genome-wide copy number estimation using high-density …

A comparison of DNA copy number profiling platforms

J Greshock, B Feng, C Nogueira, E Ivanova, I Perna… - Cancer research, 2007 - AACR
Microarray-based assays designed to detect these chromosomal copy number alterations
on a genome-wide … platform, a log 2 copy number ratio was measured from raw data derived …

Optimal design of oligonucleotide microarrays for measurement of DNA copy-number

AJ Sharp, A Itsara, Z Cheng, C Alkan… - Human molecular …, 2007 - academic.oup.com
DNA microarrays composed of oligonucleotides attached to … Initially developed for the
measurement of gene expression of … method to measure DNA copy-number genome-wide. …