Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics

TJ White, T Bruns, S Lee, J Taylor - PCR protocols: a guide to …, 1990 - books.google.com
Comparative studies of the nucleotide sequences of ribosomal RNA (rRNA) genes provide a
means for analyzing phylogenetic relationships over a wide range of taxonomic levels …

Evolutionary relationships within the fungi: analyses of nuclear small subunit rRNA sequences

TD Bruns, R Vilgalys, SM Barns, D Gonzalez… - Molecular phylogenetics …, 1992 - Elsevier
Nucleotide sequences of the small subunit ribosomal RNA (18S) gene were used to
investigate evolutionary relationships within the Fungi. The inferred tree topologies are in …

Intragenomic variation of fungal ribosomal genes is higher than previously thought

UK Simon, M Weiß - Molecular biology and evolution, 2008 - academic.oup.com
Nuclear ribosomal genes in most eukaryotes are present in multiple copies and often used
for taxonomic and phylogenetic analyses. We comprehensively examined intragenomic …

A 5.8 S nuclear ribosomal RNA gene sequence database: applications to ecology and evolution

KW Cullings, DR Vogler - Molecular Ecology, 1998 - Wiley Online Library
We compiled a 5.8 S nuclear ribosomal gene sequence database for animals, plants, and
fungi using both newly generated and GenBank sequences. We demonstrate the utility of …

Sequencing and analysis of fungal rRNA operons for development of broad-range fungal PCR assays

PD Khot, DL Ko, DN Fredricks - Applied and environmental …, 2009 - Am Soc Microbiol
ABSTRACT rRNA genes are attractive targets for developing PCR assays targeting human
fungal pathogens. Most studies have focused on the 18S rRNA gene, internal transcribed …

[53] Phylogenetic analysis using ribosomal RNA

GJ Olsen - Methods in Enzymology, 1988 - Elsevier
Publisher Summary The inference of phylogenetic relationships from molecular data is
contributing greatly in understanding the evolution of life on Earth. Although the discussion …

[引用][C] Microbial ecology and evolution: a ribosomal RNA approach

GJ Olsen, DJ Lane, SJ Giovannoni… - Annual reviews in …, 1986 - annualreviews.org
Nucleic acid sequencing technology is bringing a much-needed phylogenetic perspective
into microbiology. There is no more fundamental and straightforн ward way to classify and …

[HTML][HTML] Intragenomic variation in nuclear ribosomal markers and its implication in species delimitation, identification and barcoding in fungi

S Paloi, JJ Luangsa-Ard, W Mhuantong, M Stadler… - Fungal Biology …, 2022 - Elsevier
Intragenomic variation is the molecular variation within the genome among repetitive DNA.
As a multigene family, nuclear ribosomal DNA (rDNA) has been widely used in fungal …

[HTML][HTML] Concerted evolution in the ribosomal RNA cistron

K Naidoo, ET Steenkamp, MPA Coetzee, MJ Wingfield… - PLoS one, 2013 - journals.plos.org
Background Gene conversion is the mechanism proposed to be responsible for the
homogenization of multigene families such as the nuclear ribosomal gene clusters. This …

Ribosomal Database Project: data and tools for high throughput rRNA analysis

JR Cole, Q Wang, JA Fish, B Chai… - Nucleic acids …, 2014 - academic.oup.com
Abstract Ribosomal Database Project (RDP; http://rdp. cme. msu. edu/) provides the
research community with aligned and annotated rRNA gene sequence data, along with tools …