Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics
Comparative studies of the nucleotide sequences of ribosomal RNA (rRNA) genes provide a
means for analyzing phylogenetic relationships over a wide range of taxonomic levels …
means for analyzing phylogenetic relationships over a wide range of taxonomic levels …
Evolutionary relationships within the fungi: analyses of nuclear small subunit rRNA sequences
Nucleotide sequences of the small subunit ribosomal RNA (18S) gene were used to
investigate evolutionary relationships within the Fungi. The inferred tree topologies are in …
investigate evolutionary relationships within the Fungi. The inferred tree topologies are in …
Intragenomic variation of fungal ribosomal genes is higher than previously thought
Nuclear ribosomal genes in most eukaryotes are present in multiple copies and often used
for taxonomic and phylogenetic analyses. We comprehensively examined intragenomic …
for taxonomic and phylogenetic analyses. We comprehensively examined intragenomic …
A 5.8 S nuclear ribosomal RNA gene sequence database: applications to ecology and evolution
KW Cullings, DR Vogler - Molecular Ecology, 1998 - Wiley Online Library
We compiled a 5.8 S nuclear ribosomal gene sequence database for animals, plants, and
fungi using both newly generated and GenBank sequences. We demonstrate the utility of …
fungi using both newly generated and GenBank sequences. We demonstrate the utility of …
Sequencing and analysis of fungal rRNA operons for development of broad-range fungal PCR assays
PD Khot, DL Ko, DN Fredricks - Applied and environmental …, 2009 - Am Soc Microbiol
ABSTRACT rRNA genes are attractive targets for developing PCR assays targeting human
fungal pathogens. Most studies have focused on the 18S rRNA gene, internal transcribed …
fungal pathogens. Most studies have focused on the 18S rRNA gene, internal transcribed …
[53] Phylogenetic analysis using ribosomal RNA
GJ Olsen - Methods in Enzymology, 1988 - Elsevier
Publisher Summary The inference of phylogenetic relationships from molecular data is
contributing greatly in understanding the evolution of life on Earth. Although the discussion …
contributing greatly in understanding the evolution of life on Earth. Although the discussion …
[引用][C] Microbial ecology and evolution: a ribosomal RNA approach
GJ Olsen, DJ Lane, SJ Giovannoni… - Annual reviews in …, 1986 - annualreviews.org
Nucleic acid sequencing technology is bringing a much-needed phylogenetic perspective
into microbiology. There is no more fundamental and straightforн ward way to classify and …
into microbiology. There is no more fundamental and straightforн ward way to classify and …
[HTML][HTML] Intragenomic variation in nuclear ribosomal markers and its implication in species delimitation, identification and barcoding in fungi
Intragenomic variation is the molecular variation within the genome among repetitive DNA.
As a multigene family, nuclear ribosomal DNA (rDNA) has been widely used in fungal …
As a multigene family, nuclear ribosomal DNA (rDNA) has been widely used in fungal …
[HTML][HTML] Concerted evolution in the ribosomal RNA cistron
Background Gene conversion is the mechanism proposed to be responsible for the
homogenization of multigene families such as the nuclear ribosomal gene clusters. This …
homogenization of multigene families such as the nuclear ribosomal gene clusters. This …
Ribosomal Database Project: data and tools for high throughput rRNA analysis
JR Cole, Q Wang, JA Fish, B Chai… - Nucleic acids …, 2014 - academic.oup.com
Abstract Ribosomal Database Project (RDP; http://rdp. cme. msu. edu/) provides the
research community with aligned and annotated rRNA gene sequence data, along with tools …
research community with aligned and annotated rRNA gene sequence data, along with tools …