[HTML][HTML] VTCdb: a gene co-expression database for the crop species Vitis vinifera (grapevine)
Background Gene expression datasets in model plants such as Arabidopsis have
contributed to our understanding of gene function and how a single underlying biological …
contributed to our understanding of gene function and how a single underlying biological …
Construction and validation of a gene co-expression network in grapevine (Vitis vinifera. L.)
Gene co-expression analysis has been widely used for predicting gene functions because
genes within modules of a co-expression network may be involved in similar biological …
genes within modules of a co-expression network may be involved in similar biological …
[HTML][HTML] VESPUCCI: exploring patterns of gene expression in grapevine
Large-scale transcriptional studies aim to decipher the dynamic cellular responses to a
stimulus, like different environmental conditions. In the era of high-throughput omics biology …
stimulus, like different environmental conditions. In the era of high-throughput omics biology …
The grapevine expression atlas reveals a deep transcriptome shift driving the entire plant into a maturation program
M Fasoli, S Dal Santo, S Zenoni, GB Tornielli… - The Plant …, 2012 - academic.oup.com
We developed a genome-wide transcriptomic atlas of grapevine (Vitis vinifera) based on 54
samples representing green and woody tissues and organs at different developmental …
samples representing green and woody tissues and organs at different developmental …
[HTML][HTML] Constructing integrated networks for identifying new secondary metabolic pathway regulators in grapevine: recent applications and future opportunities
Representing large biological data as networks is becoming increasingly adopted for
predicting gene function while elucidating the multifaceted organization of life processes. In …
predicting gene function while elucidating the multifaceted organization of life processes. In …
Aggregated gene co-expression networks predict transcription factor regulatory landscapes in grapevine
L Orduña, A Santiago, D Navarro-Payá… - Journal of …, 2023 - academic.oup.com
Gene co-expression networks (GCNs) have not been extensively studied in non-model
plants. However, the rapid accumulation of transcriptome datasets in certain species …
plants. However, the rapid accumulation of transcriptome datasets in certain species …
[HTML][HTML] Transcriptomic comparison between two Vitis vinifera L. varieties (Trincadeira and Touriga Nacional) in abiotic stress conditions
Background Predicted climate changes announce an increase of extreme environmental
conditions including drought and excessive heat and light in classical viticultural regions …
conditions including drought and excessive heat and light in classical viticultural regions …
[HTML][HTML] VitisNet:“Omics” integration through grapevine molecular networks
Background Genomic data release for the grapevine has increased exponentially in the last
five years. The Vitis vinifera genome has been sequenced and Vitis EST, transcriptomic …
five years. The Vitis vinifera genome has been sequenced and Vitis EST, transcriptomic …
[HTML][HTML] VitisExpDB: a database resource for grape functional genomics
H Doddapaneni, H Lin, MA Walker, J Yao… - BMC plant biology, 2008 - Springer
Abstract Background The family Vitaceae consists of many different grape species that grow
in a range of climatic conditions. In the past few years, several studies have generated …
in a range of climatic conditions. In the past few years, several studies have generated …
Characterizing the grape transcriptome. Analysis of expressed sequence tags from multiple Vitis species and development of a compendium of gene expression …
F Goes da Silva, A Iandolino, F Al-Kayal… - Plant …, 2005 - academic.oup.com
We report the analysis and annotation of 146,075 expressed sequence tags from Vitis
species. The majority of these sequences were derived from different cultivars of Vitis …
species. The majority of these sequences were derived from different cultivars of Vitis …