Losses in microbial functional diversity reduce the rate of key soil processes

C Trivedi, M Delgado-Baquerizo, K Hamonts… - Soil Biology and …, 2019 - Elsevier
The consequences of microbial functional diversity loss on key ecosystem processes remain
debatable due to lack of firm evidence from observational or manipulative experiments for a …

Distinct growth strategies of soil bacteria as revealed by large-scale colony tracking

M Ernebjerg, R Kishony - Applied and environmental microbiology, 2012 - Am Soc Microbiol
Our understanding of microbial ecology has been significantly furthered in recent years by
advances in sequencing techniques, but comprehensive surveys of the phenotypic …

Digging deeper to find unique microbial communities: the strong effect of depth on the structure of bacterial and archaeal communities in soil

KG Eilers, S Debenport, S Anderson, N Fierer - Soil Biology and …, 2012 - Elsevier
Microorganisms exist throughout the soil profile and those microorganisms living in sub-
surface horizons likely play key roles in nutrient cycling and soil formation. However, the …

Relic DNA is abundant in soil and obscures estimates of soil microbial diversity

P Carini, PJ Marsden, JW Leff, EE Morgan… - Nature …, 2016 - nature.com
Extracellular DNA from dead microorganisms can persist in soil for weeks to years 1–3.
Although it is implicitly assumed that the microbial DNA recovered from soil predominantly …

Pyrosequencing-based assessment of soil pH as a predictor of soil bacterial community structure at the continental scale

CL Lauber, M Hamady, R Knight… - Applied and …, 2009 - Am Soc Microbiol
Soils harbor enormously diverse bacterial populations, and soil bacterial communities can
vary greatly in composition across space. However, our understanding of the specific …

Tracking of the activity of individual bacteria in temperate forest soils shows guild-specific responses to seasonality

S Lladó, T Větrovský, P Baldrian - Soil Biology and Biochemistry, 2019 - Elsevier
Bacteria belong to the key players in the carbon cycling in forest soils and thus affect the
global C balance. Our understanding of bacterial contribution to ecosystem processes relies …

Active and total prokaryotic communities in dryland soils

R Angel, Z Pasternak, MIM Soares… - FEMS microbiology …, 2013 - academic.oup.com
The relationship between total and metabolically active soil microbial communities can
change drastically with environment. In dry lands, water availability is a key factor limiting …

[HTML][HTML] Back to the future of soil metagenomics

J Nesme, W Achouak, SN Agathos, M Bailey… - Frontiers in …, 2016 - frontiersin.org
Direct extraction and characterization of microbial community DNA through PCR amplicon
surveys and metagenomics has revolutionized the study of environmental microbiology and …

Microbial diversity and function in soil: from genes to ecosystems

V Torsvik, L Øvreås - Current opinion in microbiology, 2002 - Elsevier
Soils sustain an immense diversity of microbes, which, to a large extent, remains
unexplored. A range of novel methods, most of which are based on rRNA and rDNA …

[HTML][HTML] Monitoring complex bacterial communities using culture-independent molecular techniques: application to soil environment

L Ranjard, F Poly, S Nazaret - Research in microbiology, 2000 - Elsevier
Over the last decade, important advances in molecular biology led to the development of
culture-independent approaches to describing bacterial communities. These new strategies …