Early phylogenetic estimate of the effective reproduction number of SARSCoV2
A Lai, A Bergna, C Acciarri, M Galli… - Journal of medical …, 2020 - Wiley Online Library
… CoV-2 phylogeny obtained in the present study is in line with previous estimates and suggests
… November 2019, several weeks before the first cases were described. This was confirmed …
… November 2019, several weeks before the first cases were described. This was confirmed …
Early phylogenetic estimate of the effective reproduction number of 2019-nCoV
A Lai, A Bergna, C Acciarri, M Galli, G Zehender - medRxiv, 2020 - medrxiv.org
… -nCoV phylogeny obtained in the present study is in line with previous estimates and suggests
… November 2019, several weeks before the first cases were described. This was confirmed …
… November 2019, several weeks before the first cases were described. This was confirmed …
Estimating the basic reproductive number from viral sequence data
… are estimated independently and therefore enables for the first time the estimation of the basic
reproductive number of … Here, we develop a Bayesian method of phylogenetic analysis for …
reproductive number of … Here, we develop a Bayesian method of phylogenetic analysis for …
The estimation of the basic reproduction number for infectious diseases
K Dietz - Statistical methods in medical research, 1993 - journals.sagepub.com
… basic reproduction numbers greater than one. Because the magnitude of R 0 allows one to
determine the amount of … from a population, it is crucial to estimate Ro for a given disease in a …
determine the amount of … from a population, it is crucial to estimate Ro for a given disease in a …
[HTML][HTML] Improved estimation of time-varying reproduction numbers at low case incidence and between epidemic waves
KV Parag - PLoS Computational Biology, 2021 - journals.plos.org
… This means we compute instantaneous reproduction number, R s , estimates that formally
… The second problem, which we call reverse-filtering, is the complement of the first. The …
… The second problem, which we call reverse-filtering, is the complement of the first. The …
[HTML][HTML] Phylogenetic and epidemic modeling of rapidly evolving infectious diseases
… the first tentative steps have been taken to reconcile these two theoretical approaches. We
survey the Bayesian phylogenetic … due to phylogenetic estimation error. Finally, in situations …
survey the Bayesian phylogenetic … due to phylogenetic estimation error. Finally, in situations …
Adaptive estimation for epidemic renewal and phylogenetic skyline models
KV Parag, CA Donnelly - Systematic biology, 2020 - academic.oup.com
… Reliable estimates can provide key insights into the climatic … renewal model estimates the
effective reproduction number, R… We discuss the results of the first problem in the Appendix (…
effective reproduction number, R… We discuss the results of the first problem in the Appendix (…
[HTML][HTML] Estimate of the basic reproduction number for COVID-19: a systematic review and meta-analysis
Y Alimohamadi, M Taghdir… - Journal of Preventive …, 2020 - ncbi.nlm.nih.gov
… An accurate estimation of the basic reproduction number (R 0 ) of … and meta-analysis aimed
to estimate the pooled R 0 for … The name of the first author, country, year of the study, model …
to estimate the pooled R 0 for … The name of the first author, country, year of the study, model …
Unifying phylogenetic birth–death models in epidemiology and macroevolution
… estimate characteristic parameters of the SIR model, for example, the basic or effective
reproductive number… We do so by first deriving a likelihood for general single- and multitype BDS …
reproductive number… We do so by first deriving a likelihood for general single- and multitype BDS …
Quantifying transmission heterogeneity using both pathogen phylogenies and incidence time series
… We also estimated the basic reproductive number R 0 , time of the first infection T 0 , and
the probability of sampling an infectious individual in the incidence time series ρ at the same …
the probability of sampling an infectious individual in the incidence time series ρ at the same …
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