Effect of Conformational Equilibrium on Solvation Properties of 1, 2-DCE in Water: A Solvation Thermodynamics and 3D-RISM Study
DJ Raposo - The Journal of Physical Chemistry B, 2023 - ACS Publications
… In this sense, the Solvation Thermodynamics (ST) may offer … by 3D-RISM, for instance), with
the properties of the molecule as … the SGE’s from 3D-RISM with KH closure, is compared with …
the properties of the molecule as … the SGE’s from 3D-RISM with KH closure, is compared with …
A systematic analysis of the binding affinity between the Pim-1 kinase and its inhibitors based on the MM/3D-RISM/KH method
T Hasegawa, M Sugita, T Kikuchi… - Journal of Chemical …, 2017 - ACS Publications
… 3D-RISM/KH theory describes the solvation structure in terms of the spatial density
distribution of water molecules around a solute. Here we provide a brief outline of this …
distribution of water molecules around a solute. Here we provide a brief outline of this …
[PDF][PDF] Development of solvation theories focused on solvation
D Yokogawa - Mol. Biol, 1999 - core.ac.uk
… Although the 3D solvation structure calculated by 3DRISM or molecular simulation is much
more … cost and long computational time are required to obtain accurate solvation structure. …
more … cost and long computational time are required to obtain accurate solvation structure. …
Revisiting the salt-induced conformational change of DNA with 3D-RISM theory
Y Maruyama, N Yoshida, F Hirata - The journal of physical …, 2010 - ACS Publications
… of solvation free energy with respect to the atomic coordinates of the solute molecule based
on the 3D-RISM theory… The 3D-RISM/KH equations were solved on a grid of 256 3 points in a …
on the 3D-RISM theory… The 3D-RISM/KH equations were solved on a grid of 256 3 points in a …
Molecular selectivity in aquaporin channels studied by the 3D-RISM theory
S Phongphanphanee, N Yoshida… - The Journal of Physical …, 2010 - ACS Publications
… Thermodynamic properties such as the partial molar volume and the solvation free energy
… functions (3D-DF) of each site of a solvent molecule, g(r). In this work, we use the KH closure …
… functions (3D-DF) of each site of a solvent molecule, g(r). In this work, we use the KH closure …
Predicting PAMPA permeability using the 3D-RISM-KH theory: are we there yet?
… Our findings justify the use of the 3D-RISM-KH based solvation energy descriptors as apparent
PAMPA permeability predictors, as a proof of concept. The larger deviation in logP e-pH7.…
PAMPA permeability predictors, as a proof of concept. The larger deviation in logP e-pH7.…
[HTML][HTML] Predicting 1, 9-Decadiene− Water Partition Coefficients Using the 3D-RISM-KH Molecular Solvation Theory
D Roy, D Dutta, A Kovalenko - Physchem, 2021 - mdpi.com
… to first establish a 3D-RISM-KH-based computational protocol to describe the liquid state
of DED. This theoretical framework is then validated against traditional molecular dynamics (MD…
of DED. This theoretical framework is then validated against traditional molecular dynamics (MD…
[PDF][PDF] Development of theoretical methods for describing the protonation states of solvated molecules based on the integral equation theory of liquids
藤木涼 - 2022 - catalog.lib.kyushu-u.ac.jp
… coupled with 3DRISM theory and application to polypeptides. Chapter 5 is devoted to general
conclusions. … -KH calculation. 𝑢 (𝒓) is an interaction potential function between a solute …
conclusions. … -KH calculation. 𝑢 (𝒓) is an interaction potential function between a solute …
Electronic structure, binding energy, and solvation structure of the streptavidin− biotin supramolecular complex: ONIOM and 3D-RISM study
… The 3D hydration structure of the unliganded streptavidin and the streptavidin−biotin … the
3D-RISM-KH molecular theory of solvation shows there is one immobilized water molecule at …
3D-RISM-KH molecular theory of solvation shows there is one immobilized water molecule at …
Partial Molar Volumes of Proteins in Solution: Prediction by Statistical–Mechanical, 3D-RISM–KB Molecular Theory of Solvation
A Kovalenko - 2014 - books.rsc.org
… at a finite concentration, the 3D-RISM–KH molecular theory of solvation properly accounts
for … -polar features of solvation, such as hydrogen bonding, structural solvent molecules, salt …
for … -polar features of solvation, such as hydrogen bonding, structural solvent molecules, salt …