Effect of Conformational Equilibrium on Solvation Properties of 1, 2-DCE in Water: A Solvation Thermodynamics and 3D-RISM Study

DJ Raposo - The Journal of Physical Chemistry B, 2023 - ACS Publications
… In this sense, the Solvation Thermodynamics (ST) may offer … by 3D-RISM, for instance), with
the properties of the molecule as … the SGE’s from 3D-RISM with KH closure, is compared with …

A systematic analysis of the binding affinity between the Pim-1 kinase and its inhibitors based on the MM/3D-RISM/KH method

T Hasegawa, M Sugita, T Kikuchi… - Journal of Chemical …, 2017 - ACS Publications
3D-RISM/KH theory describes the solvation structure in terms of the spatial density
distribution of water molecules around a solute. Here we provide a brief outline of this …

[PDF][PDF] Development of solvation theories focused on solvation

D Yokogawa - Mol. Biol, 1999 - core.ac.uk
… Although the 3D solvation structure calculated by 3DRISM or molecular simulation is much
more … cost and long computational time are required to obtain accurate solvation structure. …

Revisiting the salt-induced conformational change of DNA with 3D-RISM theory

Y Maruyama, N Yoshida, F Hirata - The journal of physical …, 2010 - ACS Publications
… of solvation free energy with respect to the atomic coordinates of the solute molecule based
on the 3D-RISM theory… The 3D-RISM/KH equations were solved on a grid of 256 3 points in a …

Molecular selectivity in aquaporin channels studied by the 3D-RISM theory

S Phongphanphanee, N Yoshida… - The Journal of Physical …, 2010 - ACS Publications
… Thermodynamic properties such as the partial molar volume and the solvation free energy
… functions (3D-DF) of each site of a solvent molecule, g(r). In this work, we use the KH closure …

Predicting PAMPA permeability using the 3D-RISM-KH theory: are we there yet?

D Roy, D Dutta, DS Wishart, A Kovalenko - … of Computer-Aided Molecular …, 2021 - Springer
… Our findings justify the use of the 3D-RISM-KH based solvation energy descriptors as apparent
PAMPA permeability predictors, as a proof of concept. The larger deviation in logP e-pH7.…

[HTML][HTML] Predicting 1, 9-Decadiene− Water Partition Coefficients Using the 3D-RISM-KH Molecular Solvation Theory

D Roy, D Dutta, A Kovalenko - Physchem, 2021 - mdpi.com
… to first establish a 3D-RISM-KH-based computational protocol to describe the liquid state
of DED. This theoretical framework is then validated against traditional molecular dynamics (MD…

[PDF][PDF] Development of theoretical methods for describing the protonation states of solvated molecules based on the integral equation theory of liquids

藤木涼 - 2022 - catalog.lib.kyushu-u.ac.jp
… coupled with 3DRISM theory and application to polypeptides. Chapter 5 is devoted to general
conclusions. … -KH calculation. 𝑢 (𝒓) is an interaction potential function between a solute …

Electronic structure, binding energy, and solvation structure of the streptavidin− biotin supramolecular complex: ONIOM and 3D-RISM study

Q Li, S Gusarov, S Evoy… - The Journal of Physical …, 2009 - ACS Publications
… The 3D hydration structure of the unliganded streptavidin and the streptavidin−biotin … the
3D-RISM-KH molecular theory of solvation shows there is one immobilized water molecule at …

Partial Molar Volumes of Proteins in Solution: Prediction by Statistical–Mechanical, 3D-RISM–KB Molecular Theory of Solvation

A Kovalenko - 2014 - books.rsc.org
… at a finite concentration, the 3D-RISMKH molecular theory of solvation properly accounts
for … -polar features of solvation, such as hydrogen bonding, structural solvent molecules, salt …