Amber is the collective name for a suite of programs that … The term amber is also sometimes
used to refer to the empirical … packages have implemented the amber force fields, and other …

… We have installed and tested Amber 9 on a number of platforms, using UNIX, Linux, Microsoft
Windows or Macintosh OSX operating systems. However, owing to time and access …

… Amber. Here, we outline the most recent developments, since version 9 was released in April
2006, of the Amber and … , referred to here as simply the Amber package. The latest release …

… the Amber programs. Further, the force fields are in the public domain, whereas the codes
are distributed under a license agreement. The Amber … (We have moved to numbering Amber …

… We have installed and tested Amber 9 on a number of platforms, using UNIX, Linux, Microsoft
Windows or Macintosh OSX operating systems. However, owing to time and access …

… Here we look at extending the AMBER force field to cover more organic species. This is …
bond angles in the Amber protein force field. The average percent error is 9.0%. One should …

… simulation of a number of lipid types with the AMBER MD package. The modular nature of
this … with the AMBER development philosophy, Lipid14 is compatible with the AMBER protein, …

… We examined an amber-like bead that was found in Colonial-period Maya deposits … 9),
24 dated to approximately 1575 AD It gave NMR spectra clearly characteristic of Baltic amber (…

… a Åqvist's cation parameters as specified by the AMBER-99 7 and OPLS 9 forcefields.
The parameters for the TIP3P water model are taken from Jorgensen et al. Note that …

… several times in Amber's history. Second, it … Amber tools and force fields by virtue of knowing
how to interpret the information in Amber's prmtop files; similarly, the VMD graphics tools9 …