[图书][B] Automated structure solution with the PHENIX suite

PH Zwart, PV Afonine, RW Grosse-Kunstleve, LW Hung… - 2008 - Springer
… , and completion of crystallographic structures has the potential to produce minimally biased
… The PHENIX software suite is a highly automated system for macromolecular structure

The Phenix software for automated determination of macromolecular structures

PD Adams, PV Afonine, G Bunkóczi, VB Chen… - Methods, 2011 - Elsevier
… In this article we review some of the methods implemented in the Phenix suite that are most
important in the context of structural proteomics: automated structure solution using single-…

[PDF][PDF] PHENIX: a comprehensive Python-based system for macromolecular structure solution

PD Adams, PV Afonine, G Bunkóczi… - … Section D: Biological …, 2010 - journals.iucr.org
PHENIX has been developed to provide a comprehensive system for macromolecular
crystallographic structure solution with an emphasis on the automation of all procedures. This has …

Automated structure solution with the PHENIX suite

TC Terwilliger, PH Zwart, PV Afonine… - Methods of Molecular …, 2008 - osti.gov
… , and completion of crystallographic structures has the potential to produce minimally biased
… The PHENIX software suite is a highly automated system for macromolecular structure

[PDF][PDF] Towards automated crystallographic structure refinement with phenix. refine

PV Afonine, RW Grosse-Kunstleve… - … Section D: Biological …, 2012 - journals.iucr.org
phenix.refine is tightly integrated into the PHENIX suite, where it serves as a critical component
in automated model building, final structure … overview of the major phenix.refine features, …

[PDF][PDF] PHENIX Documentation-version 1.8. 2-1309

PD Home - Citeseer
… The PHENIX software suite is a highly automated system for macromolecular structure
at the early stages of structure solution, such as data analyses (phenix.xtriage), substructure …

Phenix-a comprehensive python-based system for macromolecular structure solution

TC Terwilliger, LW Hung, PD Adams, PV Afonine… - 2009 - osti.gov
Phenix has been developed to provide a comprehensive system for crystallographic
structure solution with an emphasis on automation of all procedures. This has relied on the …

[PDF][PDF] Macromolecular structure determination using X-rays, neutrons and electrons: recent developments in Phenix

D Liebschner, PV Afonine, ML Baker… - … Section D: Structural …, 2019 - journals.iucr.org
… The design of Phenix emphasizes the automation of procedures, … -line features of Phenix
and streamlines the transition … enhanced to improve the structuresolution workflow. For example…

[PDF][PDF] REdiii: a pipeline for automated structure solution

MF Bohn, CA Schiffer - Acta Crystallographica Section D: Biological …, 2015 - journals.iucr.org
… No fully automated solution can be adapted to all … phenix.ligand_pipeline can produce
ligand-bound solutions … The ligand preparation and fitting tools within the PHENIX suite appear to …

Comparison of automated crystallographic model-building pipelines

E Alharbi, PS Bond, R Calinescu… - … Section D: Structural …, 2019 - journals.iucr.org
PHENIX AutoBuild is part of the PHENIX software suite for the automated modelling of
molecular structures… Using a GUI based on the main PHENIX GUI, PHENIX AutoBuild facilitates …