BioMart–biological queries made easy
… In this paper, we have demonstrated that BioMart provides a range of simple, but powerful,
interfaces for querying biological data. These may be used for many important research …
interfaces for querying biological data. These may be used for many important research …
BioMart Central Portal—unified access to biological data
… In order to access biological content of the marts available through the BioMart web server,
a query request is used. Figure 3a illustrates an … BioMart—biological queries made easy …
a query request is used. Figure 3a illustrates an … BioMart—biological queries made easy …
BioMart and Bioconductor: a powerful link between biological databases and microarray data analysis
… executes direct SQL queries to the BioMart databases (eg Ensembl). The biomaRt package
provides a tight integration of large, public or locally installed BioMart databases with data …
provides a tight integration of large, public or locally installed BioMart databases with data …
BioMart: driving a paradigm change in biological data management
A Kasprzyk - Database, 2011 - academic.oup.com
… concepts, the BioMart project has driven a change in the biological data management
paradigm, where individual biological databases are … BioMart–biological queries made easy …
paradigm, where individual biological databases are … BioMart–biological queries made easy …
[PDF][PDF] Integrating biological data resources into R with biomaRt
S Durinck - The Newsletter of the R Project Volume 6/5, December …, 2006 - r-project.org
… This way a large collection of biological data becomes available in R, making it an ideal
environment for biological data mining. Queries to the BioMart databases are either performed …
environment for biological data mining. Queries to the BioMart databases are either performed …
Biomartr: genomic data retrieval with R
HG Drost, J Paszkowski - Bioinformatics, 2017 - academic.oup.com
… The biomaRt package aims to provide functional annotation methods … meta-genomic
approaches and are not easy to use for non-programming … BioMart – biological queries made easy …
approaches and are not easy to use for non-programming … BioMart – biological queries made easy …
pubmed2ensembl: a resource for mining the biological literature on genes
… the BioMart 0.7 build process and query interfaces to provide a foundation for the extensions
to BioMart 0.7 we developed as a part of pubmed2ensembl (see Results). A BioMart is …
to BioMart 0.7 we developed as a part of pubmed2ensembl (see Results). A BioMart is …
Using BioMart as a framework to manage and query pancreatic cancer data
RJ Cutts, E Gadaleta, NR Lemoine, C Chelala - Database, 2011 - academic.oup.com
… query data from other biomart databases and, therefore, allows the community to perform
highly detailed queries … , we present several biologically relevant queries that can be performed …
highly detailed queries … , we present several biologically relevant queries that can be performed …
BioMart: a data federation framework for large collaborative projects
… BioMart contains an integration layer that … BioMart has a flexible data model, so that it can
be used with a wide range of biological data types, and built-in query optimizations make it …
be used with a wide range of biological data types, and built-in query optimizations make it …
BioMart Central Portal: an open database network for the biological community
JM Guberman, J Ai, O Arnaiz, J Baran, A Blake… - Database, 2011 - academic.oup.com
… of tools make Central Portal a one-stop shop for biological data querying. Here, we describe
the structure of Central Portal and show example queries to demonstrate its capabilities. …
the structure of Central Portal and show example queries to demonstrate its capabilities. …