Development of Genome-wide Simple Sequence Repeat Markers Using Whole-genome Shotgun Sequences of Sorghum (Sorghum bicolor (L.) Moench)

J Yonemaru, T Ando, T Mizubayashi, S Kasuga… - DNA …, 2009 - academic.oup.com
Simple sequence repeat (SSR) markers with a high degree of polymorphism contribute to
… SSR markers, including regions flanking the SSRs, in whole-genome shotgun sequences of …

Development and genetic mapping of microsatellite markers from whole genome shotgun sequences in Brassica oleracea

H Li, X Chen, Y Yang, J Xu, J Gu, J Fu, X Qian… - Molecular …, 2011 - Springer
… The availability of whole genome shotgun sequences (WGSs) in Brassica oleracea …
opportunity for development of microsatellite or simple sequence repeat (SSR) markers for genome …

Development and characterization of simple sequence repeat markers providing genome-wide coverage and high resolution in maize

JIE Xu, L Liu, Y Xu, C Chen, T Rong, F Ali… - DNA …, 2013 - academic.oup.com
… , easy to score, and highly abundant. In this study, we used whole-genome sequences from
16 … SSR abundance and to develop a set of high-density polymorphic SSR markers. A total of …

Genome-wide characterization and development of simple sequence repeat markers for genetic studies in pomegranate (Punica granatum L.)

PG Patil, NV Singh, S Parashuram, A Bohra… - Trees, 2020 - Springer
… The whole genome shotgun (WGS) sequences of Punica … sequences serve as valuable
resources for genome-wideWhole-genome assemblies have enabled the development

Genome wide characterization of simple sequence repeats in watermelon genome and their application in comparative mapping and genetic diversity analysis

H Zhu, P Song, DH Koo, L Guo, Y Li, S Sun, Y Weng… - Bmc Genomics, 2016 - Springer
… in species of Cucurbitaceae family whose whole genome sequences are not yet available. …
The large number of genome wide SSR markers developed from watermelon genome in this …

Development of simple sequence repeat markers based on whole-genome sequencing to reveal the genetic diversity of Glomerella cingulata in China

Z Liu, S Lian, B Li, X Dong, C Wang, WK Cho… - Journal of general plant …, 2020 - Springer
repeats were analyzed using Tandem Repeat Finder (Benson 1999; http://www.pathogenomics.sfu.ca/islandviewer/resources.php).
This whole-genome shotgun … flanking sequences, …

Whole genome shotgun sequencing of Brassica oleracea and its application to gene discovery and annotation in Arabidopsis

M Ayele, BJ Haas, N Kumar, H Wu, Y Xiao… - Genome …, 2005 - genome.cshlp.org
… The resulting sequences led to the creation of 21 gene models at 17 … genome-wide
expression data based on whole genome tiling arrays and massively parallel signature sequencing

Genome-Wide Characterization and Linkage Mapping of Simple Sequence Repeats in Mei (Prunus mume Sieb. et Zucc.)

L Sun, W Yang, Q Zhang, T Cheng, H Pan, Z Xu… - PloS one, 2013 - journals.plos.org
… -effective means of developing a huge number of SSR markers at the whole-genome scale
has become … The whole-genome sequences of mei have been recently obtained by Solexa …

Marker development using SLAF-seq and whole-genome shotgun strategy to fine-map the semi-dwarf gene ari-e in barley

Q Jia, C Tan, J Wang, XQ Zhang, J Zhu, H Luo, J Yang… - BMC genomics, 2016 - Springer
… two sequenced barley varieties, Morex and Barke, based on genome-wide alignment, and
1,140 InDel markers were … Primer sequences and amplified lengths of the polymorphism …

Development of Genome-wide Simple Sequence Repeat Markers from Whole-genome Sequence of Mungbean (Vigna radiata)

KM Mayalagu, K Adhimoolam, J Nallathambi… - Legume …, 2023 - indianjournals.com
Using SSR marker to identify the MYMV resistance gene in mungbean [Vigna radiata (L.) …
Differential distribution of simple sequence repeats in eukaryotic genome sequences. Mol Biol …