Genome-wide high-throughput SNP discovery and genotyping for understanding natural (functional) allelic diversity and domestication patterns in wild chickpea

D Bajaj, S Das, S Badoni, V Kumar, M Singh… - Scientific reports, 2015 - nature.com
… in our study for large-scale mining and high-throughput genotyping of SNPs in wild and
cultivated Cicer accessions at a genome-wide scale could have multidimensional applicability in …

High-throughput SNP discovery and genotyping in durum wheat (Triticum durum Desf.)

D Trebbi, M Maccaferri, P de Heer, A Sørensen… - Theoretical and applied …, 2011 - Springer
nature and a high polymorphism. Here, we report a new set of 275 highly robust genome-wide
Triticum SNPs … These differences in the success of mapping as the function of the GTS …

Toward genome-wide SNP genotyping

AC Syvänen - Nature genetics, 2005 - nature.com
… The same approach has been used for SNP discovery across the whole genome and …
high-throughput microarray-based systems have initiated studies to identify positional or functional

[HTML][HTML] High-throughput SNP genotyping to accelerate crop improvement

MJ Thomson - Plant Breeding and Biotechnology, 2014 - plantbreedbio.org
… provided valuable SNP discovery data sets, review the various SNP genotyping platforms …
genome-wide SNP loci from large sequence data sets that will function well as SNP markers. …

Employing genome-wide SNP discovery and genotyping strategy to extrapolate the natural allelic diversity and domestication patterns in chickpea

A Kujur, D Bajaj, HD Upadhyaya, S Das… - Frontiers in Plant …, 2015 - frontiersin.org
… In addition to simultaneous high-throughput genome-wide SNP discovery and … was
further utilized to understand their functional significance and determine the molecular diversity …

Western white pine SNP discovery and high-throughput genotyping for breeding and conservation applications

JJ Liu, RA Sniezko, RN Sturrock, H Chen - BMC plant biology, 2014 - Springer
… due to a more cost-effective and flexible nature of this … comparison and subsequent
functional characterization of … a crucial prerequisite for any genome-wide association study to …

Genome-wide SNP genotyping highlights the role of natural selection in Plasmodium falciparumpopulation divergence

DE Neafsey, SF Schaffner, SK Volkman, D Park… - Genome biology, 2008 - Springer
functional variants deserving of follow-up study. Our analysis demonstrates the potential for
new high-throughput genotyping … We performed SNP discovery from 16 strains of diverse …

Development and applications of a high throughput genotyping tool for polyploid crops: single nucleotide polymorphism (SNP) array

Q You, X Yang, Z Peng, L Xu, J Wang - Frontiers in Plant Science, 2018 - frontiersin.org
… has seriously slowed SNP discovery and array development … nature of genomes and
inheritance of polyploids. Although … Since the functional redundancy of homoeologs can “lock up” …

Genome-wide association testing beyond SNPs

L Harris, EM McDonagh, X Zhang, K Fawcett… - Nature Reviews …, 2024 - nature.com
… that is well known to functionally affect human traits. Recent … to SNP arrays, high-throughput
DNA sequencing (also known as next-generation sequencing (NGS)) enables the detection

High throughput SNP discovery and genotyping in grapevine (Vitis vinifera L.) by combining a re-sequencing approach and SNPlex technology

D Lijavetzky, JA Cabezas, A Ibáñez, V Rodríguez… - BMC genomics, 2007 - Springer
… plot as a function of distance. Two measures of LD are shown, D' (A) and r 2 (B) as a function
of … Furthermore, the bi-allelic nature of SNPs could enormously facilitate the accuracy and …