… the node in the species phylogeny in which it is mapped and … Phylogenetic reconstruction
methods need to be developed … root of the species phylogeny in the particular case in which …

… Molecular phylogeny: pitfalls and progress Summary Molecular phylogeny based on … of
several pitfalls affecting molecular phylogenetic reconstruction challenged the general validity of …

… In the following, we discuss the methods of molecular phylogenetic reconstruction for DNA
because DNA sequences are used most widely. These discussions also hold true for protein …

Publisher Summary This chapter focuses on DNA analyses through phylogenetic analyses
of amino acid sequences and other kinds of molecular data. Molecular phylogenetic …

… deep phylogenies, such as the tree of eukaryotes for example [8]. As a matter of fact, more
than 40 years after the birth of molecular phylogeny… Generally speaking, molecular phylogeny …

… Concurrent availability of low-cost, powerful computers and new software algorithms has led
to the routine use of molecular sequences in reconstructing evolutionary histories of organisms …

… for phylogeny reconstruction is inevitable and well founded, but that a crucial issue remains
concerning the role of morphology in phylogeny reconstruction… of molecular phylogenies, is a …

… We present here a molecular phylogenetic reconstruction of trypanosome evolution based
on nucleotide sequences of small subunit rRNA genes. The evolutionary tree suggests an …

… phylogeny of this group with all available molecular data to investigate the relationships
between different lineages, (3) compare the molecular phylogenetic … (5) reconstruct the ancestral …

… where all molecular phylogenies are reconstructed without … -based phylogenies as a “reality
check” for molecular results (… that may cause molecular analyses to reconstruct clades that …