Mutational frequencies of SARS-CoV-2 genome during the beginning months of the outbreak in USA

N Kaushal, Y Gupta, M Goyal, SF Khaiboullina… - Pathogens, 2020 - mdpi.com
… Our findings support the notion that the US SARS-CoV-2 virus genome is the product of …
SARS-CoV-2 genome accumulated mutations during the first 11 weeks of the outbreak in the US

Analysis of SARS-CoV-2 mutations over time reveals increasing prevalence of variants in the spike protein and RNA-Dependent RNA polymerase

WM Showers, SM Leach, K Kechris, M Strong - bioRxiv, 2021 - biorxiv.org
… Amid the ongoing COVID-19 pandemic, it has become … from the latter months of the analysis.
Data from Africa and South … determined by normalizing variant frequencies to the length of …

Relevant SARSCoV2 genome variation through six months of worldwide monitoring

A Hakmaoui, F Khan, A Liacini, A Kaur… - BioMed Research …, 2021 - Wiley Online Library
mutation patterns for SARS-CoV-2. Mutations were clustered based on how their frequencies
… To understand the evolution of SARS-CoV-2 over the first six months of the pandemic, we …

Analysis of the mutation dynamics of SARS-CoV-2 reveals the spread history and emergence of RBD mutant with lower ACE2 binding affinity

Y Jia, G Shen, S Nguyen, Y Zhang, KS Huang, HY Ho… - BioRxiv, 2020 - biorxiv.org
… to rise significantly in the coming months. Scientists have been … us an advantage to trace the
spread history of SARS-CoV-2 … were collected at the early stage of the pandemic, which may …

Genomic surveillance, evolution and global transmission of SARS-CoV-2 during 2019–2022

N Sharif, KJ Alzahrani, SN Ahmed, A Khan, HJ Banjer… - PLoS …, 2022 - journals.plos.org
frequency of point mutations at spike protein of SARS-CoV-2During the early three months
of the pandemic, sequenced … of SARS-CoV-2 evolved and circulating during the pandemic

Temporal landscape of mutational frequencies in SARS-CoV-2 genomes of Bangladesh: Possible implications from the ongoing outbreak in Bangladesh

O Saha, I Islam, RN Shatadru, NN Rakhi, MS Hossain… - Virus genes, 2021 - Springer
… However, sequences collected in June rather than others months … consistent with the study
carried out in USA [5]. Regions 2 … over a period of 11 weeks in USA, which was evident in our …

[HTML][HTML] Spike mutation pipeline reveals the emergence of a more transmissible form of SARS-CoV-2

B Korber, WM Fischer, S Gnanakaran, H Yoon… - BioRxiv, 2020 - biorxiv.org
… Although the observed diversity among pandemic SARS-CoV-2 … Over the past two months,
the HIV database team at Los … by identifying shifts in mutational frequencies over time. …

[HTML][HTML] Genomic surveillance of Nevada patients revealed prevalence of unique SARS-CoV-2 variants bearing mutations in the RdRp gene

PD Hartley, RL Tillett, DP AuCoin, JR Sevinsky… - … Genetics and Genomics, 2021 - Elsevier
… variants present during the same period of the outbreak. We … of specific SARS-CoV-2 variants
at very high frequency in distinct … during the initial months of the pandemic while the stay-at-…

Mutations in SARS-CoV-2 structural proteins: a global analysis

M Abavisani, K Rahimian, B Mahdavi, S Tokhanbigli… - Virology Journal, 2022 - Springer
… the frequencies of mutations among structural proteins of … characteristics from the beginning
of the pandemic to January … In the months of March and April 2021 in the state of Paraná, …

Ongoing global and regional adaptive evolution of SARS-CoV-2

ND Rochman, YI Wolf, G Faure… - Proceedings of the …, 2021 - National Acad Sciences
… Specifically, G to U mutations increase steadily in frequency throughout the second half of
… parallel mutations in the course of SARS-CoV-2 evolution during the COVID-19 pandemic. …