Phylogeny-and abundance-based metrics allow for the consistent comparison of core gut microbiome diversity indices across host species
… microbiome datasets may hinder cross-study comparisons. To … use of diversity metrics that
account for both phylogeny and … the common core microbiome without the need for filtering. …
account for both phylogeny and … the common core microbiome without the need for filtering. …
Phylogenetic Measures of the Core Microbiome
… As a result, numerous occurrence- and abundance-based … , our phylogenetic metrics show
greater consistency across … to define a core 416 community phylogeny and have outlined …
greater consistency across … to define a core 416 community phylogeny and have outlined …
Phylogeny-and abundance-based metrics allow for the consistent comparison of core gut microbiome diversity indices across host species
S Sommer, W Sommer, M Tsjapka, MB Manser… - 2021 - brage.inn.no
… microbiome datasets may hinder cross-study comparisons. To … use of diversity metrics that
account for both phylogeny and … the common core microbiome without the need for filtering. …
account for both phylogeny and … the common core microbiome without the need for filtering. …
[HTML][HTML] Host diet and evolutionary history explain different aspects of gut microbiome diversity among vertebrate clades
… (eg, for abundance-based beta-diversity metrics). At the … is consistent with a meta-analysis
of fish gut microbiomes 28 … that host phylogeny and diet explain gut microbiome diversity…
of fish gut microbiomes 28 … that host phylogeny and diet explain gut microbiome diversity…
Phylogeny-aware analysis of metagenome community ecology based on matched reference genomes while bypassing taxonomy
… able to capture only Lactobacillus, consistent with our factor 1. … based on the WoL reference
phylogeny and drawn to scale (… of k when an abundance-based metric (weighted UniFrac or …
phylogeny and drawn to scale (… of k when an abundance-based metric (weighted UniFrac or …
Convergence of human and Old World monkey gut microbiomes demonstrates the importance of human ecology over phylogeny
… between host phylogeny and gut microbiome functional potential (Bray… abundance based
on Bray-Curtis distance matrices, … as the 16S rRNA data for consistency. We also evaluated the …
on Bray-Curtis distance matrices, … as the 16S rRNA data for consistency. We also evaluated the …
[HTML][HTML] Beyond samples: A metric revealing more connections of gut microbiota between individuals
… metric that measures the differences of the gut microbiota between individuals. This novel
metric is developed to measure the difference … The additive feature allows for less information …
metric is developed to measure the difference … The additive feature allows for less information …
A faithful gut: core features of gastrointestinal microbiota of long-distance migratory bats remain stable despite dietary shifts driving differences in specific bacterial taxa
… Consistent with previous studies comparing volant vertebrates … This allowed us to compare
the abundant features of the … , the obtained metrics represent differences in the microbiome’s …
the abundant features of the … , the obtained metrics represent differences in the microbiome’s …
Incorporating 16S gene copy number information improves estimates of microbial diversity and abundance
… diversity and abundance based on 16S sequence data. … contrasts for the observed phylogeny
and data to the random … If there is not a consistent difference in copy number between …
and data to the random … If there is not a consistent difference in copy number between …
Insect gut bacterial diversity determined by environmental habitat, diet, developmental stage, and phylogeny of host
… Good's coverage, the abundance-based coverage estimator (… qualified and quantified using
a metric based on OTU richness (… This is not consistent with the data presented in this study (…
a metric based on OTU richness (… This is not consistent with the data presented in this study (…