Rare, convergent antibodies targeting the stem helix broadly neutralize diverse betacoronaviruses

C Dacon, L Peng, TH Lin, C Tucker, CCD Lee… - Cell host & …, 2023 - cell.com
C Dacon, L Peng, TH Lin, C Tucker, CCD Lee, Y Cong, L Wang, L Purser, AJR Cooper…
Cell host & microbe, 2023cell.com
Humanity has faced three recent outbreaks of novel betacoronaviruses, emphasizing the
need to develop approaches that broadly target coronaviruses. Here, we identify 55
monoclonal antibodies from COVID-19 convalescent donors that bind diverse
betacoronavirus spike proteins. Most antibodies targeted an S2 epitope that included the
K814 residue and were non-neutralizing. However, 11 antibodies targeting the stem helix
neutralized betacoronaviruses from different lineages. Eight antibodies in this group …
Summary
Humanity has faced three recent outbreaks of novel betacoronaviruses, emphasizing the need to develop approaches that broadly target coronaviruses. Here, we identify 55 monoclonal antibodies from COVID-19 convalescent donors that bind diverse betacoronavirus spike proteins. Most antibodies targeted an S2 epitope that included the K814 residue and were non-neutralizing. However, 11 antibodies targeting the stem helix neutralized betacoronaviruses from different lineages. Eight antibodies in this group, including the six broadest and most potent neutralizers, were encoded by IGHV1-46 and IGKV3-20. Crystal structures of three antibodies of this class at 1.5–1.75-Å resolution revealed a conserved mode of binding. COV89-22 neutralized SARS-CoV-2 variants of concern including Omicron BA.4/5 and limited disease in Syrian hamsters. Collectively, these findings identify a class of IGHV1-46/IGKV3-20 antibodies that broadly neutralize betacoronaviruses by targeting the stem helix but indicate these antibodies constitute a small fraction of the broadly reactive antibody response to betacoronaviruses after SARS-CoV-2 infection.
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