Ribosome-linked mRNA-rRNA chimeras reveal active novel virus host associations

JC Ignacio-Espinoza, SM Laperriere, YC Yeh… - BioRxiv, 2020 - biorxiv.org
… group due to the scarcity of the chimeric reads, which appear to be … viral groups previously
reported only to infect very different host groups than we report here, for example a novel T7-…

Divergent RNA viruses infecting sea lice, major ectoparasites of fish

T Chang, BPV Hunt, J Hirai, CA Suttle - PLoS Pathogens, 2023 - journals.plos.org
… Sequences of novel viruses associated with Caligus clemensi can be … viral replicative
strands [72] and identifying ribosome-linked mRNA-rRNA chimeras [73] replicating viruses can be …

Host prediction for disease-associated gastrointestinal cressdnaviruses

CM Kinsella, M Deijs, C Becker, P Broekhuizen… - Virus …, 2022 - academic.oup.com
… Next, we tested statistical associations between viruses and respective host candidates …
to determine if an association existed between presence of a host candidate and a respective …

[HTML][HTML] Emerging technologies in the study of the virome

SE Smith, W Huang, K Tiamani, M Unterer… - Current opinion in …, 2022 - Elsevier
… , and have identified novel viruses that were not identified by … Host/virus chimeras once
again suggest that the virus was inside the host cell and therefore must be able to infect that host

Examining horizontal gene transfer in microbial communities

IL Brito - Nature Reviews Microbiology, 2021 - nature.com
… complete information about host–MGE associations within a … Chimeric reads can associate
active viral genomes with … We need methods that can measure the utility of MGEs in novel

Global overview and major challenges of host prediction methods for uncultivated phages

C Coclet, S Roux - Current Opinion in Virology, 2021 - Elsevier
… methods to establish phage–host associations for uncultivated phages, researchers have to
… inferring the specific host of novel eukaryotic viruses are also being developed and refined. …

Diversity and evolution of Mamiellophyceae: early-diverging Phytoplanktonic Green algae containing many cosmopolitan species

CCM Yung, E Rey Redondo, F Sanchez, S Yau… - Journal of Marine …, 2022 - mdpi.com
… water samples to identify novel virushost associations [118]. With this kind of host non-specific
ligation method compared to the traditional hostvirus isolation and infection method, …

Viruses in marine invertebrate holobionts: Complex interactions between phages and bacterial symbionts

K Zhou, T Zhang, XW Chen, Y Xu… - Annual Review of …, 2024 - annualreviews.org
Ribosome-linked mRNA-rRNA chimeras reveal active novel virus host associations bioRxiv
2020.10.30.332502. https://doi.… Ribosome-linked mRNA-rRNA chimeras reveal active novel

iPHoP: An integrated machine learning framework to maximize host prediction for metagenome-derived viruses of archaea and bacteria

S Roux, AP Camargo, FH Coutinho, SM Dabdoub… - PLoS …, 2023 - journals.plos.org
… to isolated viruses, in particular host association. Different … to predict the host(s) of
uncultivated viruses based on their … host prediction for phages infecting “novelhosts, ie, a host

[图书][B] Computational discovery of viruses and their hosts

CM Kinsella - 2023 - core.ac.uk
… we may conclude a novel virus discovered in the intestines of a person is a human-infecting …
Ribosome-linked mRNA-rRNA chimeras reveal active novel virus host associations. bioRxiv …