Signaling hypergraphs
… A signaling hypergraph … a signaling hypergraph (Figure I right). Thus, each of these biological
events has a more direct interpretation when represented as a signaling hypergraph rather …
events has a more direct interpretation when represented as a signaling hypergraph rather …
Pathway analysis with signaling hypergraphs
… In this paper, we formally define the signaling hypergraph as a powerful representation of …
to signaling hyperedges and signaling hypergraphs simply as hyperedges and hypergraphs, …
to signaling hyperedges and signaling hypergraphs simply as hyperedges and hypergraphs, …
Modeling cell communication with time-dependent signaling hypergraphs
MR Schwob, J Zhan, A Dempsey - IEEE/ACM transactions on …, 2019 - ieeexplore.ieee.org
… 3.1 Signaling Hypergraphs A hypergraph is a generalization of a graph, where an edge can
… signaling pathways as directed hypergraphs, future references to directed hypergraphs, …
… signaling pathways as directed hypergraphs, future references to directed hypergraphs, …
[HTML][HTML] Heuristic shortest hyperpaths in cell signaling hypergraphs
S Krieger, J Kececioglu - Algorithms for Molecular Biology, 2022 - Springer
… , our later experiments on real cell-signaling hypergraphs show it quickly finds a hyperpath
… experiments over the two standard cell-signaling databases in the literature. Furthermore, we …
… experiments over the two standard cell-signaling databases in the literature. Furthermore, we …
[HTML][HTML] Hypergraph-based connectivity measures for signaling pathway topologies
… graph, and poorly connected as a hypergraph (which captures many-to-… hypergraph
connectivity that iteratively increases connectivity from a node while preserving the hypergraph …
connectivity that iteratively increases connectivity from a node while preserving the hypergraph …
An introduction to hypergraph signal processing
S Barbarossa, M Tsitsvero - 2016 IEEE International …, 2016 - ieeexplore.ieee.org
… In this work we considered signals defined over hypergraphs. First we examined possible
ways to define Fourier basis for hypergraph signals and for signals defined over cell or sim…
ways to define Fourier basis for hypergraph signals and for signals defined over cell or sim…
Fast approximate shortest hyperpaths for inferring pathways in cell signaling hypergraphs
S Krieger, J Kececioglu - 2021 - repository.arizona.edu
… , our later experiments on real cell-signaling hypergraphs show it quickly finds a hyperpath
… experiments over the two standard cell-signaling databases in the literature. We present …
… experiments over the two standard cell-signaling databases in the literature. We present …
Introducing hypergraph signal processing: Theoretical foundation and practical applications
… on a special hypergraph called complexes. In this article [4], hypergraph signals are associ…
as tensors, we define a specific form of hypergraph signals and hypergraph signal shifting. …
as tensors, we define a specific form of hypergraph signals and hypergraph signal shifting. …
Computing signal transduction in signaling networks modeled as boolean networks, petri nets and Hypergraphs
LS Vieira, P Vera-Licona - Biorxiv, 2018 - biorxiv.org
… Naturally, every graph can be considered as a special case of a hypergraph. The
signaling hypergraphs can be converted to standard graphs in two different ways [72]. …
signaling hypergraphs can be converted to standard graphs in two different ways [72]. …
Learning hypergraphs from signals with dual smoothness prior
… of a hypergraph structure learning … hypergraph from the node signals under a novel dual
smoothness prior that discloses the relationship between the node signals and the hypergraph …
smoothness prior that discloses the relationship between the node signals and the hypergraph …