Specialized computational methods for denoising, B1 correction, and kinetic modeling in hyperpolarized 13C MR EPSI studies of liver tumors

PM Lee, HY Chen, JW Gordon, Z Zhu… - Magnetic resonance …, 2021 - Wiley Online Library
PM Lee, HY Chen, JW Gordon, Z Zhu, PEZ Larson, N Dwork, M Van Criekinge, L Carvajal…
Magnetic resonance in medicine, 2021Wiley Online Library
Purpose To develop a novel post‐processing pipeline for hyperpolarized (HP) 13C MRSI
that integrates tensor denoising and correction to measure pyruvate‐to‐lactate conversion
rates (kPL) in patients with liver tumors. Methods Seven HP 13C MR scans of progressing
liver tumors were acquired using a custom 13C surface transmit/receive coil and the echo‐
planar spectroscopic imaging (EPSI) data analysis included B0 correction, tensor rank
truncation, and zero‐and first‐order phase corrections to recover metabolite signals that …
Purpose
To develop a novel post‐processing pipeline for hyperpolarized (HP) 13C MRSI that integrates tensor denoising and correction to measure pyruvate‐to‐lactate conversion rates (kPL) in patients with liver tumors.
Methods
Seven HP 13C MR scans of progressing liver tumors were acquired using a custom 13C surface transmit/receive coil and the echo‐planar spectroscopic imaging (EPSI) data analysis included B0 correction, tensor rank truncation, and zero‐ and first‐order phase corrections to recover metabolite signals that would otherwise be obscured by spectral noise as well as a correction for inhomogeneous transmit () using a map aligned to the coil position for each patient scan. Processed HP data and corrected flip angles were analyzed with an inputless two‐site exchange model to calculate kPL.
Results
Denoising averages SNR increases of pyruvate, lactate, and alanine were 37.4‐, 34.0‐, and 20.1‐fold, respectively, with lactate and alanine dynamics most noticeably recovered and better defined. In agreement with Monte Carlo simulations, over‐flipped regions underestimated kPL and under‐flipped regions overestimated kPL. correction addressed this issue.
Conclusion
The new HP 13C EPSI post‐processing pipeline integrated tensor denoising and correction to measure kPL in patients with liver tumors. These technical developments not only recovered metabolite signals in voxels that did not receive the prescribed flip angle, but also increased the extent and accuracy of kPL estimations throughout the tumor and adjacent regions including normal‐appearing tissue and additional lesions.
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