Targeted degradation via direct 26S proteasome recruitment

C Bashore, S Prakash, MC Johnson… - Nature Chemical …, 2023 - nature.com
C Bashore, S Prakash, MC Johnson, RJ Conrad, IA Kekessie, SJ Scales, N Ishisoko…
Nature Chemical Biology, 2023nature.com
Engineered destruction of target proteins by recruitment to the cell's degradation machinery
has emerged as a promising strategy in drug discovery. The majority of molecules that
facilitate targeted degradation do so via a select number of ubiquitin ligases, restricting this
therapeutic approach to tissue types that express the requisite ligase. Here, we describe a
new strategy of targeted protein degradation through direct substrate recruitment to the 26S
proteasome. The proteolytic complex is essential and abundantly expressed in all cells; …
Abstract
Engineered destruction of target proteins by recruitment to the cell’s degradation machinery has emerged as a promising strategy in drug discovery. The majority of molecules that facilitate targeted degradation do so via a select number of ubiquitin ligases, restricting this therapeutic approach to tissue types that express the requisite ligase. Here, we describe a new strategy of targeted protein degradation through direct substrate recruitment to the 26S proteasome. The proteolytic complex is essential and abundantly expressed in all cells; however, proteasomal ligands remain scarce. We identify potent peptidic macrocycles that bind directly to the 26S proteasome subunit PSMD2, with a 2.5-Å-resolution cryo-electron microscopy complex structure revealing a binding site near the 26S pore. Conjugation of this macrocycle to a potent BRD4 ligand enabled generation of chimeric molecules that effectively degrade BRD4 in cells, thus demonstrating that degradation via direct proteasomal recruitment is a viable strategy for targeted protein degradation.
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