The structurefunction linkage database

E Akiva, S Brown, DE Almonacid… - Nucleic acids …, 2014 - academic.oup.com
… at automatic structurefunction mapping of … functional annotation or subgroup/family
assignments, except as can be obtained from automatically retrieved links to other public databases. …

Leveraging enzyme structurefunction relationships for functional inference and experimental design: the structurefunction linkage database

SCH Pegg, SD Brown, S Ojha, J Seffernick… - Biochemistry, 2006 - ACS Publications
… We have developed a resource, the structurefunction linkage database (… a database we
have designed to provide information and analysis of the links between structure and function

Using the StructureFunction Linkage Database to Characterize Functional Domains in Enzymes

S Brown, P Babbitt - Current protocols in bioinformatics, 2014 - Wiley Online Library
database to predict the function of uncharacterized enzymes and to correct misannotated …
-accessible database designed to link enzyme sequence, structure, and molecular function (…

Prolinks: a database of protein functional linkages derived from coevolution

PM Bowers, M Pellegrini, MJ Thompson, J Fierro… - Genome biology, 2004 - Springer
… a greater number of functional linkages than other databases; each link from Prolinks is
assigned … or complexes compares favorably to the linkages contained in String and Predictome. …

Biocuration in the structurefunction linkage database: the anatomy of a superfamily

GL Holliday, SD Brown, E Akiva, D Mischel… - Database, 2017 - academic.oup.com
function to a sequence. This article describes the biocuration process and methods used in
the structure-function linkage database (… to infer detailed functional properties for functionally …

The CATH Database provides insights into protein structure/function relationships

CA Orengo, FMG Pearl, JE Bray, AE Todd… - Nucleic acids …, 1999 - academic.oup.com
… and structural groupings is stored in a Postgres relational database (11) with links to a ligand
database … This allows us to analyse the relationship between the 3D structure and function, …

Lipase engineering database: understanding and exploiting sequence–structurefunction relationships

J Pleiss, M Fischer, M Peiker, C Thiele… - Journal of Molecular …, 2000 - Elsevier
… (4) Links to … , structure or list of mutations. The sequence table includes information on
homologous families and on enzyme function for all members of each family, and links structures

PROFESS: A protein function, evolution, structure and sequence database

T Triplet, MD Shortridge, MA Griep, JL Stark… - Database, 2010 - academic.oup.com
… However, there are barriers to linking individual databases because of different data formats
… of other databases that contain information relevant to the structure, function and evolution …

Neuroscience databases: tools for exploring brain structurefunction relationships

R Kötter - … Transactions of the Royal Society of London …, 2001 - royalsocietypublishing.org
… Currently, perhaps the best working example of a database federation in neuroscience is
provided by the BrainInfo database with its dynamic links to other online databases (eg http://…

Predictome: a database of putative functional links between proteins

JC Mellor, I Yanai, KH Clodfelter… - Nucleic acids …, 2002 - academic.oup.com
databasedatabase exists to perform a complementary analysis in interaction space as
one does in sequence space using BLAST (2). Here we present a database of predicted links