The structure–function linkage database
E Akiva, S Brown, DE Almonacid… - Nucleic acids …, 2014 - academic.oup.com
… at automatic structure–function mapping of … functional annotation or subgroup/family
assignments, except as can be obtained from automatically retrieved links to other public databases. …
assignments, except as can be obtained from automatically retrieved links to other public databases. …
Leveraging enzyme structure− function relationships for functional inference and experimental design: the structure− function linkage database
SCH Pegg, SD Brown, S Ojha, J Seffernick… - Biochemistry, 2006 - ACS Publications
… We have developed a resource, the structure−function linkage database (… a database we
have designed to provide information and analysis of the links between structure and function …
have designed to provide information and analysis of the links between structure and function …
Using the Structure‐Function Linkage Database to Characterize Functional Domains in Enzymes
S Brown, P Babbitt - Current protocols in bioinformatics, 2014 - Wiley Online Library
… database to predict the function of uncharacterized enzymes and to correct misannotated …
-accessible database designed to link enzyme sequence, structure, and molecular function (…
-accessible database designed to link enzyme sequence, structure, and molecular function (…
Prolinks: a database of protein functional linkages derived from coevolution
… a greater number of functional linkages than other databases; each link from Prolinks is
assigned … or complexes compares favorably to the linkages contained in String and Predictome. …
assigned … or complexes compares favorably to the linkages contained in String and Predictome. …
Biocuration in the structure–function linkage database: the anatomy of a superfamily
GL Holliday, SD Brown, E Akiva, D Mischel… - Database, 2017 - academic.oup.com
… function to a sequence. This article describes the biocuration process and methods used in
the structure-function linkage database (… to infer detailed functional properties for functionally …
the structure-function linkage database (… to infer detailed functional properties for functionally …
The CATH Database provides insights into protein structure/function relationships
… and structural groupings is stored in a Postgres relational database (11) with links to a ligand
database … This allows us to analyse the relationship between the 3D structure and function, …
database … This allows us to analyse the relationship between the 3D structure and function, …
Lipase engineering database: understanding and exploiting sequence–structure–function relationships
J Pleiss, M Fischer, M Peiker, C Thiele… - Journal of Molecular …, 2000 - Elsevier
… (4) Links to … , structure or list of mutations. The sequence table includes information on
homologous families and on enzyme function for all members of each family, and links structures …
homologous families and on enzyme function for all members of each family, and links structures …
PROFESS: A protein function, evolution, structure and sequence database
… However, there are barriers to linking individual databases because of different data formats
… of other databases that contain information relevant to the structure, function and evolution …
… of other databases that contain information relevant to the structure, function and evolution …
Neuroscience databases: tools for exploring brain structure–function relationships
R Kötter - … Transactions of the Royal Society of London …, 2001 - royalsocietypublishing.org
… Currently, perhaps the best working example of a database federation in neuroscience is
provided by the BrainInfo database with its dynamic links to other online databases (eg http://…
provided by the BrainInfo database with its dynamic links to other online databases (eg http://…
Predictome: a database of putative functional links between proteins
JC Mellor, I Yanai, KH Clodfelter… - Nucleic acids …, 2002 - academic.oup.com
… database … database exists to perform a complementary analysis in interaction space as
one does in sequence space using BLAST (2). Here we present a database of predicted links …
one does in sequence space using BLAST (2). Here we present a database of predicted links …
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