Duplicate gene evolution, homoeologous recombination, and transcriptome characterization in allopolyploid cotton

LE Flagel, JF Wendel, JA Udall - BMC genomics, 2012 - Springer
… of polyploidy and duplicate gene evolution. We demonstrate that cotton genes have
experienced an increased rate of molecular evolution following duplication by polyploidy, and that …

Genomic diversifications of five Gossypium allopolyploid species and their impact on cotton improvement

ZJ Chen, A Sreedasyam, A Ando, Q Song… - Nature …, 2020 - nature.com
… Here we analyze genome evolution and diversification for all five allopolyploid cotton … In
brief, methylC-seq reads of all allopolyploid cottons were mapped to genome sequences of Gh …

Genome evolution of allopolyploids: a process of cytological and genetic diploidization

XF Ma, JP Gustafson - Cytogenetic and genome research, 2005 - karger.com
… Because these arrays occur at four chromosomal loci in allopolyploid cotton, the authors
concluded that repeats from the different diploid progenitors must have become homogenized …

[HTML][HTML] Asymmetric evolution and domestication in allotetraploid cotton (Gossypium hirsutum L.)

L Fang, X Guan, T Zhang - The Crop Journal, 2017 - Elsevier
… Upland cottoncotton is a model for polyploid genome evolution and crop domestication.
To explore the genomic mysteries of allopolyploid cotton, we investigated asymmetric evolution

Evolutionary rate variation, genomic dominance and duplicate gene expression evolution during allotetraploid cotton speciation

LE Flagel, JF Wendel - New Phytologist, 2010 - Wiley Online Library
… We report homoeolog expression bias favoring the allopolyploid D genome over the A
genome in all species (among five polyploid species, D biases ranging from c. 54 to 60%), in …

[PDF][PDF] Origin of a subgenome and genome evolution of allotetraploid cotton species

P He, Y Zhang, G Xiao - Molecular Plant, 2020 - cell.com
… , the allopolyploid cotton G. hirsutum, rather than diploid cotton species, is widely cultivated
and contributes to more than 90% of global cotton fiber production. Therefore, revealing the …

Homoeolog expression bias and expression level dominance in allopolyploid cotton

MJ Yoo, E Szadkowski, JF Wendel - Heredity, 2013 - nature.com
… level dominance in cotton became more balanced on an evolutionary timescale, with the …
in natural allopolyploids, even though the overall magnitude of gene pairs displaying …

Insights into the evolution of cotton diploids and polyploids from whole-genome re-sequencing

JT Page, MD Huynh, ZS Liechty, K Grupp… - G3: Genes …, 2013 - academic.oup.com
… from diploid and allopolyploid cottons, we compiled a database of SNPs between the various
genomes studied. Our second objective was to describe genome evolution between the …

Evolution and diversity of the cotton genome

G Hu, CE Grover, J Jareczek, D Yuan, Y Dong… - Cotton precision …, 2021 - Springer
genome evolution and the implications of this understanding for targeted breeding objectives.
The cotton … Despite the observation that gene loss in the allopolyploid cotton genome is …

Duplicated genes evolve independently after polyploid formation in cotton

RC Cronn, RL Small, JF Wendel - Proceedings of the …, 1999 - National Acad Sciences
… in cotton, there was no evidence of interaction among duplicated genes in the allopolyploid.
… Our results indicate that most duplicated genes in allopolyploid cotton evolve independently …