Evolutionary rate variation, genomic dominance and duplicate gene expression evolution during allotetraploid cotton speciation

LE Flagel, JF Wendel - New Phytologist, 2010 - Wiley Online Library
… of gene expression among a diversified cohort of five allopolyploid species in the cotton
genus (Gossypium). Using this phylogenetic framework and comparisons with expression

Homoeolog expression bias and expression level dominance in allopolyploid cotton

MJ Yoo, E Szadkowski, JF Wendel - Heredity, 2013 - nature.com
gene expression patterns in interspecific hybrid F 1 , and synthetic and natural allopolyploid
cotton … extent and direction of expression level dominance (total level of expression for both …

Gene-expression novelty in allopolyploid cotton: a proteomic perspective

G Hu, J Koh, MJ Yoo, S Chen, JF Wendel - Genetics, 2015 - academic.oup.com
… by changes in gene expression that are thought to contribute … Here we describe global
changes in the single-celled cotton … D-genome progenitors, amounts of differential expression

Regulatory controls of duplicated gene expression during fiber development in allotetraploid cotton

J You, Z Liu, Z Qi, Y Ma, M Sun, L Su, H Niu, Y Peng… - Nature …, 2023 - nature.com
… The dynamics of genetic regulation of gene expression between coresident subgenomes
in … Here we document the genetic regulation of fiber development in allotetraploid cotton

Coordinated and fine-scale control of homoeologous gene expression in allotetraploid cotton

LE Flagel, L Chen, B Chaudhary… - Journal of …, 2009 - academic.oup.com
… homoeolog expression ratios for genes found on 2 well-characterized regions of the
allotetraploid cotton (Gossypium hirsutum) genome. By collecting homoeolog expression data from …

Expression patterns and functional divergence of homologous genes accompanied by polyploidization in cotton (Gossypium hirsutum L.)

Z Peng, H Cheng, G Sun, Z Pan, X Wang… - Science China Life …, 2020 - Springer
allotetraploid cotton has been widely used as an ideal model to investigate gene expression
… pathways and their involved genes between allotetraploid cotton and their progenitors at …

[HTML][HTML] Asymmetric evolution and domestication in allotetraploid cotton (Gossypium hirsutum L.)

L Fang, X Guan, T Zhang - The Crop Journal, 2017 - Elsevier
… polyploidy are closely related to genome-wide … expression bias in cotton and other
allotetraploids, there are further unbiased gene pairs, which contradict the individual gene

Histone deacetylase (HDAC) gene family in allotetraploid cotton and its diploid progenitors: In silico identification, molecular characterization, and gene expression …

M Imran, S Shafiq, MK Naeem, E Widemann… - International Journal of …, 2020 - mdpi.com
… In order to unravel the possible physiological functions of HDACs in allotetraploid cotton,
we next investigated the expression pattern of G. hirsutum HDACs in different tissues by …

Histone modifications define expression bias of homoeologous genomes in allotetraploid cotton

D Zheng, W Ye, Q Song, F Han, T Zhang… - Plant …, 2016 - academic.oup.com
gene expression in polyploids. We examined H3K4me3 density and transcriptome maps in
root-tip cells of allotetraploid cotton … with equal numbers of expressed genes between the two …

Accumulation of genome‐specific transcripts, transcription factors and phytohormonal regulators during early stages of fiber cell development in allotetraploid cotton

S Samuel Yang, F Cheung, JJ Lee, M Ha… - The Plant …, 2006 - Wiley Online Library
Gene expression during the early stages of fiber cell development and in allopolyploid … of
AA genome-specific transcripts in the allotetraploid cotton may facilitate the fiber-specific gene