Development of an efficient and precise adenine base editor (ABE) with expanded target range in allotetraploid cotton (Gossypium hirsutum)

G Wang, Z Xu, F Wang, Y Huang, Y Xin, S Liang, B Li… - BMC biology, 2022 - Springer
… % efficiency on-target sites of the allotetraploid cotton genome. … Furthermore, DNA and RNA
off-target analysis of cotton … -target mutations, while very low-level RNA off-target mutations …

Divergent improvement of two cultivated allotetraploid cotton species

L Fang, T Zhao, Y Hu, Z Si, X Zhu, Z Han… - Plant Biotechnology …, 2021 - Wiley Online Library
… In order to assess the range of improvement and application value of interspecific haplotypes
or introgressions, we analysed the field performance of 229 Gb and 45 Gh cultivars or lines …

Development and mapping of SNP assays in allotetraploid cotton

RL Byers, DB Harker, SM Yourstone… - Theoretical and Applied …, 2012 - Springer
… Genomes were further reduced by selecting genomic fragments from the PCR reaction in the
range … of SNP assays has targeted both genic and non-genic portions of the cotton genome. …

Genomic diversifications of five Gossypium allopolyploid species and their impact on cotton improvement

ZJ Chen, A Sreedasyam, A Ando, Q Song… - Nature …, 2020 - nature.com
… landscapes and target genes for crop improvement. … and diversification, allotetraploid
cotton genomes retained the … The assembled genomes range in size from 2.2 to 2.3 gigabase …

Insights into the evolution of cotton diploids and polyploids from whole-genome re-sequencing

JT Page, MD Huynh, ZS Liechty, K Grupp… - G3: Genes …, 2013 - academic.oup.com
… Because we have made this a public resource, any researcher investigating cotton now
has homoeo-SNPs and allele-SNPs information for any target gene already identified. This …

Gossypium barbadense and Gossypium hirsutum genomes provide insights into the origin and evolution of allotetraploid cotton

Y Hu, J Chen, L Fang, Z Zhang, W Ma, Y Niu, L Ju… - Nature …, 2019 - nature.com
Allotetraploid cotton is an economically important natural-fiber-producing crop worldwide. …
genomes for these two cultivated allotetraploid species with pronounced improvement in …

Development of chromosome-specific markers with high polymorphism for allotetraploid cotton based on genome-wide characterization of simple sequence repeats in …

C Lu, C Zou, Y Zhang, D Yu, H Cheng, P Jiang… - BMC genomics, 2015 - Springer
… Tetraploid cotton contains two sets of homologous chromosomes, the At- and Dt-subgenomes.
Consequently, many markers in cotton were mapped to multiple positions during linkage …

High‐efficient and precise base editing of C•G to T•A in the allotetraploid cotton (Gossypium hirsutum) genome using a modified CRISPR/Cas9 system

L Qin, J Li, Q Wang, Z Xu, L Sun… - Plant biotechnology …, 2020 - Wiley Online Library
… and accuracy for the generation of targeted point mutations in allotetraploid cotton. … in
allotetraploid cotton, the endogenous GhCLA and GhPEBP genes were chosen as targets for base …

… analysis of extant cotton progenitors revealed tetraploidization and identified genome-specific single nucleotide polymorphism in diploid and allotetraploid cotton

X Guan, G Nah, Q Song, JA Udall, DM Stelly… - BMC research …, 2014 - Springer
… Gene expression studies in allotetraploid cotton are complicated by the homoeologous loci
of A- and D-genome origins. To develop genomic resources for gene expression and cotton

Homoeolog expression bias and expression level dominance in allopolyploid cotton

MJ Yoo, E Szadkowski, JF Wendel - Heredity, 2013 - nature.com
… domestication has greatly altered the leaf transcriptome of cultivated cotton, even without
leaves being obvious, direct phenotypic targets. This selection may operate at the level of …