[HTML][HTML] The application of temperature sensitivity CRISPR/LbCpf1 (LbCas12a) mediated genome editing in allotetraploid cotton (G. hirsutum) and creation of …

B Li, S Liang, M Alariqi, F Wang, G Wang… - Plant Biotechnology …, 2021 - ncbi.nlm.nih.gov
… However, the temperature sensitivity of LbCpf1 has not been tested in cotton yet, a high
temperature‐resistant crop. In order to improve LbCpf1 efficiency and determine the …

Epigenomic and functional analyses reveal roles of epialleles in the loss of photoperiod sensitivity during domestication of allotetraploid cottons

Q Song, T Zhang, DM Stelly, ZJ Chen - Genome biology, 2017 - Springer
… Here we generated single-base resolution methylomes of domesticated allotetraploid cottons
and their wild tetraploid and diploid relatives. More than 12 million differentially methylated …

Evolutionary divergence of duplicated genomes in newly described allotetraploid cottons

R Peng, Y Xu, S Tian, T Unver, Z Liu… - Proceedings of the …, 2022 - National Acad Sciences
… We aligned seven allotetraploid cotton genomes to the Gm (AD4_JGI) reference genome
and then applied three methods to identify SVs, including smartie-SV (https://github.com/zeeev/…

Gossypium barbadense and Gossypium hirsutum genomes provide insights into the origin and evolution of allotetraploid cotton

Y Hu, J Chen, L Fang, Z Zhang, W Ma, Y Niu, L Ju… - Nature …, 2019 - nature.com
Cotton evolutionary processes are also partially driven by the cultural and … of cotton to
humans. To our knowledge, this is the first comparison of these two important allotetraploid cotton

Genomic diversifications of five Gossypium allopolyploid species and their impact on cotton improvement

ZJ Chen, A Sreedasyam, A Ando, Q Song… - Nature …, 2020 - nature.com
… distribution and diversification, allotetraploid cotton genomes retained the syntenic gene …
root tips were pretreated with cycloheximide (25 ppm) for 3 h at room temperature. The 25S …

Gene-expression novelty in allopolyploid cotton: a proteomic perspective

G Hu, J Koh, MJ Yoo, S Chen, JF Wendel - Genetics, 2015 - academic.oup.com
Allopolyploidization is accompanied by changes in gene expression that are thought to
contribute to phenotypic diversification. Here we describe global changes in the single-celled …

Characterization and Stress Response of the JmjC Domain-Containing Histone Demethylase Gene Family in the Allotetraploid Cotton Species Gossypium hirsutum

J Zhang, J Feng, W Liu, Z Ren, J Zhao, X Pei, Y Liu… - Plants, 2020 - mdpi.com
… functionally deficient mutant was more sensitive to salt stress [… be reversed after ambient
temperature returning to the normal [… five tetraploid species are allotetraploids possessing both A …

Functional examination of lncRNAs in allotetraploid Gossypium hirsutum

L Wang, J Han, K Lu, M Li, M Gao, Z Cao, T Zhao… - BMC genomics, 2021 - Springer
… LncRNAs were more active in abiotic stresses than PCG expression, especially temperature
… Our study on functional lncRNAs in allotetraploid cotton confirms that the rapid evolution of …

… -specific markers with high polymorphism for allotetraploid cotton based on genome-wide characterization of simple sequence repeats in diploid cottons (Gossypium arboreum L …

C Lu, C Zou, Y Zhang, D Yu, H Cheng, P Jiang… - BMC genomics, 2015 - Springer
cotton contains two sets of homologous chromosomes, the At- and Dt-subgenomes.
Consequently, many markers in cotton … -subgenomes to tetraploid cotton. These sequences …

Parental legacy versus regulatory innovation in salt stress responsiveness of allopolyploid cotton (Gossypium) species

Y Dong, G Hu, CE Grover, ER Miller, S Zhu… - The Plant …, 2022 - Wiley Online Library
cottons. By comparing both the total and partitioned expression patterns between the salt-sensitive
the question of how these two allotetraploid cottons respond to salt treatment relative …