Genome-scale data, angiosperm relationships, and 'ending incongruence': a cautionary tale in phylogenetics

DE Soltis, VA Albert, V Savolainen, K Hilu, YL Qiu… - Trends in plant …, 2004 - cell.com
… the phylogenetic history of organisms. During just the past decade, the amount of sequence
data available for building phylogenetic … to the study of angiosperm phylogeny illustrates the …

Data congruence and phylogeny of the Papaveraceae sl based on four data sets: atpB and rbcL sequences, trnK restriction sites, and morphological characters

SB Hoot, JW Kadereit, FR Blattner, KB Jork… - Systematic Botany, 1997 - JSTOR
… investigate the phylogenetic relationships among the major … data sets: DNA sequences of
the chloroplast genes rbcL and atpB, … of amino acid sequence data in angiosperm phylogenetic

[PDF][PDF] Towards understanding basal angiosperm diversification: recent insights using rapidly evolving genomic regions

T Borsch, C Löhne, K Müller, KW Hilu… - … Acta Leopoldina NF, 2005 - academia.edu
… DNA in angiosperm phylogenetic studies are explored. … used in angiosperm phylogenetics
such as rbcL and atpB (eg, … and phylogenetic utility of rapidly and non-coding sequences in …

A phylogeny of the monocots, as inferred from rbcL and atpA sequence variation, and a comparison of methods for calculating jackknife and bootstrap values

JI Davis, DW Stevenson, G Petersen… - Systematic …, 2004 - ingentaconnect.com
… A phylogenetic analysis of the monocots was conducted on the basis of nucleotide sequence
… comprises 213 rbcL sequences and 217 atpA sequences, with sequences of both genes …

Molecular evolution and phylogeny of the atpB-rbcL spacer of chloroplast DNA in the true mosses

TY Chiang, BA Schaal - Genome, 2000 - cdnsciencepub.com
… the atpB and rbcL genes of the chloroplast genome was used to estimate the phylogeny of
11 … The reconstructed phylogeny based on the atpB–rbcL spacer sequences indicated the …

Molecular phylogenetics of Caryophyllales based on nuclear 18S rDNA and plastid rbcL, atpB, and matK DNA sequences

P Cuénoud, V Savolainen, LW Chatrou… - American Journal of …, 2002 - Wiley Online Library
… the phylogeny of the order at inter- and infrafamilial levels using partial sequences of the …
We also combined these matK sequences with those from plastid rbcL and atpB genes and …

Phylogenetic relationships among early-diverging eudicots based on four genes: were the eudicots ancestrally woody?

S Kim, DE Soltis, PS Soltis, MJ Zanis, Y Suh - Molecular Phylogenetics and …, 2004 - Elsevier
… In this paper, we present the results of phylogenetic analyses of early-diverging eudicots
based on combined sequences for four genes, rbcL, atpB, 18S rDNA, and 26S rDNA. Our goal …

Molecular phylogenies in angiosperm evolution.

W Martin, D Lydiate, H Brinkmann… - Molecular Biology …, 1993 - academic.oup.com
sequences for &CL, a conservatively evolving chloroplast gene, in order to retrace angiosperm
phylogeny from molecular sequences. The conservative mode of plant gupC sequence

[HTML][HTML] Impact of gene molecular evolution on phylogenetic reconstruction: a case study in the rosids (Superorder Rosanae, Angiosperms)

KW Hilu, CM Black, D Oza - PLoS one, 2014 - journals.plos.org
phylogenetic informativeness of four single-copy orthologs selected for this study (plastid
atpB… generated complete or partial sequences for matK and sequences obtained from GenBank …

Phylogenetic analyses of large data sets: Approaches using the angiosperms

DE Soltis, PS Soltis - The Biology of Biodiversity, 2000 - Springer
phylogenetic analyses of a large data set of hundreds of atpB sequences representing the
angiosperms… contribution of plastid rbcL sequences to angiosperm phylogenetics. In: Soltis DE…