Genome-scale data, angiosperm relationships, and 'ending incongruence': a cautionary tale in phylogenetics

DE Soltis, VA Albert, V Savolainen, K Hilu, YL Qiu… - Trends in plant …, 2004 - cell.com
… In spite of, or even because of, the abundant data per taxon, whole-genome sequencing for
… other extant angiosperms, highlighting the limits of phylogenetics when whole genomes are …

Using plastid genome-scale data to resolve enigmatic relationships among basal angiosperms

MJ Moore, CD Bell, PS Soltis… - Proceedings of the …, 2007 - National Acad Sciences
… deep-level angiosperm relationships, several early nodes in the angiosperm branch of the
… Adding key angiosperm taxa to our data set will therefore be important to correct such error …

Analysis of 81 genes from 64 plastid genomes resolves relationships in angiosperms and identifies genome-scale evolutionary patterns

RK Jansen, Z Cai, LA Raubeson… - Proceedings of the …, 2007 - National Acad Sciences
… of angiosperms; however, genome-scale phylogenetic … To resolve relationships among the
major clades of angiosperms… plastid genomes, by far the most extensive data matrix applied …

Genomescale angiosperm phylogenies based on nuclear, plastome, and mitochondrial datasets

H Hu, P Sun, Y Yang, J Ma, J Liu - Journal of Integrative Plant …, 2023 - Wiley Online Library
… To best capture the phylogenetic relationships of the angiosperm orders, we also assembled
their corresponding plastomes and aligned the plastome and mitochondrial genes of these …

The global distribution of angiosperm genome size is shaped by climate

P Bureš, TL Elliott, P Veselý, P Šmarda… - New …, 2024 - Wiley Online Library
… To check how this may have affected our data, we compared … angiosperms in the WCVP to
that of the taxa in our genome … triangular relationship between range size and genome size, …

The sequenced angiosperm genomes and genome databases

F Chen, W Dong, J Zhang, X Guo, J Chen… - Frontiers in plant …, 2018 - frontiersin.org
… mysteries at the genome scale. Considering the low coverage of flowering plants in any
available … , with tools to identify the intragenome and cross-genome synteny relationships. …

Evaluating the impact of genomic data and priors on Bayesian estimates of the angiosperm evolutionary timescale

CSP Foster, H Sauquet, M Van der Merwe… - Systematic …, 2017 - academic.oup.com
… with genome-scale data suggest that reliable estimates of the angiosperm crown age will …
The most comprehensive analysis of the relationships among angiosperms (17 genes from …

[HTML][HTML] A large-scale species level dated angiosperm phylogeny for evolutionary and ecological analyses

SB Janssens, TLP Couvreur, A Mertens… - Biodiversity data …, 2020 - ncbi.nlm.nih.gov
data available on GenBank. rbcL is a conservative locus with low level of variation across
flowering plants … rates, making it possible to infer relationships at different taxonomic levels. In …

Whole-genome microsynteny-based phylogeny of angiosperms

T Zhao, A Zwaenepoel, JY Xue, SM Kao, Z Li… - Nature …, 2021 - nature.com
… of pairwise microsynteny relations, we here explored an approach inspired by MRL to
reconstruct phylogenies using genome structure data across a large set of angiosperm genomes. …

The relationship of recombination rate, genome structure, and patterns of molecular evolution across angiosperms

GP Tiley, JG Burleigh - BMC evolutionary biology, 2015 - Springer
… We assembled data for thirty angiosperm species with sequenced genomes and linkage
maps from the primary literature (Fig. 1; Additional file 1: Table S1; Additional file 2). Only …