Signaling networks: Asynchronous boolean models

R Albert, R Robeva - Algebraic and discrete mathematical methods for …, 2015 - Elsevier
… The Representation of Node Regulation in Boolean Models The Boolean model of a
signaling network associates each network node (ie, gene, protein, molecule) i with a binary …

Attractor analysis of asynchronous Boolean models of signal transduction networks

A Saadatpour, I Albert, R Albert - Journal of theoretical biology, 2010 - Elsevier
… and novel insights into the dynamical features of various Boolean models through capturing
the diverse behaviors of the ABA signaling network in different conditions. Furthermore, the …

Uncovering operational interactions in genetic networks using asynchronous Boolean dynamics

L Tournier, M Chaves - Journal of theoretical biology, 2009 - Elsevier
… The signalling pathways leading to apoptosis play fundamental roles in embryonic development
and in adult organisms, by maintaining normal cellular homeostasis in organs and other …

[HTML][HTML] Learning Boolean logic models of signaling networks with ASP

S Videla, C Guziolowski, F Eduati, S Thiele… - Theoretical Computer …, 2015 - Elsevier
… For example, in cancer cells, signaling networks frequently become … signaling networks,
thereby altering signaling cascades. Thus, advancing our understanding of how these networks

Interconnection of asynchronous Boolean networks, asymptotic and transient dynamics

L Tournier, M Chaves - Automatica, 2013 - Elsevier
… The dynamics of the interconnection of two Boolean networks is analyzed directly from
the … are present, we consider asynchronous Boolean networks, whose dynamics can be …

Asynchronous stochastic Boolean networks as gene network models

P Zhu, J Han - Journal of Computational Biology, 2014 - liebertpub.com
… behavior of gene regulatory networks (GRNs). Most logical models assume a synchronous
update … In this article, asynchronous stochastic Boolean networks (ASBNs) are proposed for …

Boolean modeling: a logic‐based dynamic approach for understanding signaling and regulatory networks and for making useful predictions

R Albert, J Thakar - Wiley Interdisciplinary Reviews: Systems …, 2014 - Wiley Online Library
Boolean models of signaling networks with sustained input signals by propagating the
value of the input signals … for synchronous, asynchronous and probabilistic Boolean models. …

Simulating quantitative cellular responses using asynchronous threshold Boolean network ensembles

J Jack, JF Wambaugh, I Shah - BMC systems biology, 2011 - Springer
… Here we describe an asynchronous threshold Boolean network (BN) approach to … In
our methodology, the signaling network in a single cell is represented as one asynchronous

Synchronous versus asynchronous modeling of gene regulatory networks

A Garg, A Di Cara, I Xenarios, L Mendoza… - …, 2008 - academic.oup.com
networks. We compare computational efficiency of synchronous and asynchronous models
of gene regulatory networks … combined synchronous–asynchronous simulations for faster …

Boolean networks: beyond generalized asynchronicity

T Chatain, S Haar, L Paulevé - … and Discrete Complex Systems: 24th IFIP …, 2018 - Springer
… even generalized asynchronous updating of Boolean networks, … including synchronous
and fully asynchronous, does not … model transformation which takes a Boolean network as …