Signaling networks: Asynchronous boolean models
… The Representation of Node Regulation in Boolean Models The Boolean model of a
signaling network associates each network node (ie, gene, protein, molecule) i with a binary …
signaling network associates each network node (ie, gene, protein, molecule) i with a binary …
Attractor analysis of asynchronous Boolean models of signal transduction networks
… and novel insights into the dynamical features of various Boolean models through capturing
the diverse behaviors of the ABA signaling network in different conditions. Furthermore, the …
the diverse behaviors of the ABA signaling network in different conditions. Furthermore, the …
Uncovering operational interactions in genetic networks using asynchronous Boolean dynamics
L Tournier, M Chaves - Journal of theoretical biology, 2009 - Elsevier
… The signalling pathways leading to apoptosis play fundamental roles in embryonic development
and in adult organisms, by maintaining normal cellular homeostasis in organs and other …
and in adult organisms, by maintaining normal cellular homeostasis in organs and other …
[HTML][HTML] Learning Boolean logic models of signaling networks with ASP
… For example, in cancer cells, signaling networks frequently become … signaling networks,
thereby altering signaling cascades. Thus, advancing our understanding of how these networks …
thereby altering signaling cascades. Thus, advancing our understanding of how these networks …
Interconnection of asynchronous Boolean networks, asymptotic and transient dynamics
L Tournier, M Chaves - Automatica, 2013 - Elsevier
… The dynamics of the interconnection of two Boolean networks is analyzed directly from
the … are present, we consider asynchronous Boolean networks, whose dynamics can be …
the … are present, we consider asynchronous Boolean networks, whose dynamics can be …
Asynchronous stochastic Boolean networks as gene network models
… behavior of gene regulatory networks (GRNs). Most logical models assume a synchronous
update … In this article, asynchronous stochastic Boolean networks (ASBNs) are proposed for …
update … In this article, asynchronous stochastic Boolean networks (ASBNs) are proposed for …
Boolean modeling: a logic‐based dynamic approach for understanding signaling and regulatory networks and for making useful predictions
… Boolean models of signaling networks with sustained input signals by propagating the
value of the input signals … for synchronous, asynchronous and probabilistic Boolean models. …
value of the input signals … for synchronous, asynchronous and probabilistic Boolean models. …
Simulating quantitative cellular responses using asynchronous threshold Boolean network ensembles
… Here we describe an asynchronous threshold Boolean network (BN) approach to … In
our methodology, the signaling network in a single cell is represented as one asynchronous …
our methodology, the signaling network in a single cell is represented as one asynchronous …
Synchronous versus asynchronous modeling of gene regulatory networks
… networks. We compare computational efficiency of synchronous and asynchronous models
of gene regulatory networks … combined synchronous–asynchronous simulations for faster …
of gene regulatory networks … combined synchronous–asynchronous simulations for faster …
Boolean networks: beyond generalized asynchronicity
… even generalized asynchronous updating of Boolean networks, … including synchronous
and fully asynchronous, does not … model transformation which takes a Boolean network as …
and fully asynchronous, does not … model transformation which takes a Boolean network as …
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