Genome editing with CRISPR–Cas nucleases, base editors, transposases and prime editors

AV Anzalone, LW Koblan, DR Liu - Nature biotechnology, 2020 - nature.com
… of any living cell with minimal unwanted genome modification or cellular perturbation. Our
objectives are to present readers with an overview of the capabilities and limitations of current …

Perturbing proteomes at single residue resolution using base editing

PC Després, AK Dubé, M Seki, N Yachie… - Nature …, 2020 - nature.com
… Here, we test the ability of the Target-AID base editor to systematically modify genes genome…
gRNAs in the context of base editing. Our results show that base editing is a powerful tool to …

Base editing in plants: applications, challenges, and future prospects

MK Azameti, WP Dauda - Frontiers in plant science, 2021 - frontiersin.org
… Two groups of base editors exist DNA and RNA base editors. … responsible for modifying the
base. Two DNA base editors are currently in use: the cytidine base editor (CBE) and adenine …

Microbial base editing: a powerful emerging technology for microbial genome engineering

Y Wang, Y Liu, P Zheng, J Sun, M Wang - Trends in Biotechnology, 2021 - cell.com
… known as base editing, opened new avenues for microbial genome engineering. Base editing
… Here, we review ongoing efforts to develop and apply base editing to engineer industrially …

Cytosine base editing enables quadruple-edited allogeneic CART cells for T-ALL

C Diorio, R Murray, M Naniong… - Blood, The Journal …, 2022 - ashpublications.org
cell therapy with potentially improved functionality, 12 we further demonstrated that base
editing … Tumor cell fluorescence was measured using the Incucyte live cell imaging system as a …

Base editing sensor libraries for high-throughput engineering and functional analysis of cancer-associated single nucleotide variants

FJ Sánchez-Rivera, BJ Diaz, ER Kastenhuber… - Nature …, 2022 - nature.com
… -231 cells that stably expressed one of nine base editors that span a range of PAM specificities,
editing window sizes and overall editing … We next transduced each base editor- or Cas9-…

Cryptography in the DNA of living cells enabled by multi-site base editing

V Volf, S Zhang, KM Song, S Qian, F Chen, G Church - bioRxiv, 2023 - biorxiv.org
… To implement GSE in mammalian cells, we developed a multi-site base editing protocol.
We introduced targeted edits using adenine base editors (ABEs) and cytosine base editors (…

REPAIR x, a specific yet highly efficient programmable A> I RNA base editor

Y Liu, S Mao, S Huang, Y Li, Y Chen, M Di… - The EMBO …, 2020 - embopress.org
… Briefly, we gated on the live cell population (identified based on their characteristic
forward/side scatter pattern) and then displayed its GFP vs BFP expression as a bivariate contour …

Epitope base editing CD45 in hematopoietic cells enables universal blood cancer immune therapy

N Wellhausen, RP O'Connell, S Lesch… - Science translational …, 2023 - science.org
… Engraftment was defined as >0.5 to 1% circulating huCD45 + cells of live cells. Both
patient AML samples were phenotypically identified as CD33 + /CD45 dim (compared with …

Molecular mechanism of the cytosine CRISPR base editing process and the roles of translesion DNA polymerases

G Jiang, J Wang, D Zhao, X Chen, S Pu… - ACS Synthetic …, 2021 - ACS Publications
… Furthermore, our data suggested that the indels of base editing are … the base editing
mechanism, this work first elucidates the key roles of TLS polymerases in the cytosine base editing