Human DNA methylomes at base resolution show widespread epigenomic differences

R Lister, M Pelizzola, RH Dowen, RD Hawkins, G Hon… - nature, 2009 - nature.com
… between the DNA methylomes of two human cell types, revealing the highly dynamic nature
of this epigenetic modification. The genomic context of the DNA methylation is resolved, …

Conservation and divergence of DNA methylation in eukaryotes: new insights from single base-resolution DNA methylomes

Z Su, L Han, Z Zhao - Epigenetics, 2011 - Taylor & Francis
… enabled investigators to profile genome methylation patterns at single-base resolution.
Remarkably, more than 20 eukaryotic methylomes have been generated thus far, with a majority …

'Leveling'the playing field for analyses of single-base resolution DNA methylomes

MD Schultz, RJ Schmitz, JR Ecker - Trends in Genetics, 2012 - cell.com
… of DNA methylation, collectively referred to as whole-genome bisulfite sequencing (WGBS).
Single-base resolution DNA methylomes are … for the detection of cytosine DNA methylation [ …

[HTML][HTML] The DNA methylome

M Pelizzola, JR Ecker - FEBS letters, 2011 - Elsevier
… However, base-resolution iPSCs DNA methylomes are not yet available. Several studies
have shown that methylation profiles of iPSCs are aberrant with respect to those of embryonic …

Base resolution methylome profiling: considerations in platform selection, data preprocessing and analysis

Z Sun, J Cunningham, S Slager, JP Kocher - Epigenomics, 2015 - Taylor & Francis
… ) are commonly used for base resolution DNA methylome research. Although multiple tools
… compares the pros and cons of each in methylome profiling. We then discuss approaches to …

Generating multiple base-resolution DNA methylomes using reduced representation bisulfite sequencing

A Chatterjee, EJ Rodger, PA Stockwell… - Oral Biology: Molecular …, 2017 - Springer
… to generate base-resolution methylomes. Furthermore, we provide a brief guideline for
base-… These strategies will be useful to perform large-scale, genome-wide DNA methylation …

Atlas of quantitative single-base-resolution N6-methyl-adenine methylomes

CWQ Koh, YT Goh, WSS Goh - Nature communications, 2019 - nature.com
… We envision that an atlas of single-base-resolution methylomes in different cell types will
help elucidate demethylase specificity mechanisms and identify new forms of epitranscriptomics…

Single-base resolution maps of cultivated and wild rice methylomes and regulatory roles of DNA methylation in plant gene expression

X Li, J Zhu, F Hu, S Ge, M Ye, H Xiang, G Zhang… - BMC genomics, 2012 - Springer
… To examine the rice genomic methylation landscape and assess its functional significance,
we generated single-base resolution DNA methylome maps for Asian cultivated rice Oryza …

MethBank: a database integrating next-generation sequencing single-base-resolution DNA methylation programming data

D Zou, S Sun, R Li, J Liu, J Zhang… - Nucleic acids …, 2015 - academic.oup.com
… -base nucleotide measurement of DNA methylation and accordingly the generation of
genome-… high-resolution DNA methylome. The comprehensive integration of DNA methylomes in …

DNA methylome profiling of circulating tumor cells in lung cancer at single base-pair resolution

L Zhao, X Wu, J Zheng, D Dong - Oncogene, 2021 - nature.com
… samples, and will facilitate the investigation of CTC DNA methylome. Second, this method is
… the CTC DNA methylome at single base resolution, which can discover a unique “CTC DNA