… atomistic molecular dynamics for small-scale dynamics, large-… CG model and a low friction
constant in Langevin dynamics. … Fourth, we simulated structural dynamics of dinucleosomes …

A model referred to as a Gaussian network model (GNM) was recently introduced for estimating
the dynamic characteristics of biomolecular structures, based on atomic coordinates in …

… with a special focus at the end on membrane protein complexes. We concentrate on … the
3D structure of a biomolecular complex via simulation when starting from the 3D structures of its …

… the structure, dynamics, and stability of biomolecular systems … , dynamical properties, and
activity of biomolecular systems … mechanisms of biomolecular phase transitions and structural …

… complexes is fundamental to nearly all biological processes. In recent decades, many
thousands of homomeric and heteromeric protein complex structures have … quaternary structure …

… on the energy surface) exhibits a certain degree of heterogeneity (although usually not
very significant), because structural dynamics is an essential feature of any protein system. …

… technical facets, in structural biology, focusing especially on structural virology. We describe
… structural and functional information about viral-protein and protein-complex structure, …

… unraveling the roles of structural dynamics in biomolecular assemblies using computational
… After briefly reviewing the determinants of protein and nucleic acid structural dynamics and …

… functional importance of protein and RNA structural dynamics, this review will focus on their
dynamics, though the concepts presented may be applicable to other biomolecular systems. …

… biomolecular complexes, biofuel production would certainly be bolstered by MD simulations
of realistic plant cell wall models and efficient large multi-enzyme cellulosome complexes […