RNA-Seq-based transcriptomic and metabolomic analysis reveal stress responses and programmed cell death induced by acetic acid in Saccharomyces cerevisiae

Y Dong, J Hu, L Fan, Q Chen - Scientific reports, 2017 - nature.com
… To distinguish the effects of extracellular pH and acetic acid on cell death, we respectively
compared cell viability and mitochondrial degradation in S. cerevisiae W303–1B. In this work, …

Integration of single-cell RNA sequencing and bulk RNA sequencing to reveal an immunogenic cell death-related 5-gene panel as a prognostic model for …

J Yang, J Zhang, S Na, Z Wang, H Li, Y Su, L Ji… - Frontiers in …, 2022 - frontiersin.org
… Accumulating data has shown the crucial functions of immunogenic cell death (ICD) … cell
RNA sequencing data from GSE162454 dataset distinguished malignant cells from normal cells

Analysis of immunogenic cell death in atherosclerosis based on scRNA-seq and bulk RNA-seq data

Z Tian, X Li, D Jiang - International Immunopharmacology, 2023 - Elsevier
… of immunogenic cell death in atherosclerosis, which occurs mainly in endothelial cells. … a
variety of regulated cell death (RCD, also known as programmed cell death (PCD) is a form of …

RNA-Seq analysis reveals potential regulators of programmed cell death and leaf remodelling in lace plant (Aponogeton madagascariensis)

NM Rowarth, BA Curtis, AL Einfeldt, JM Archibald… - BMC Plant …, 2021 - Springer
RNA sequencing was used to generate a de novo transcriptome for A. madagascariensis
leaves and revealed numerous DEGs potentially involved in PCD and leaf remodelling. The …

Arabidopsis cell suspension culture and RNA sequencing reveal regulatory networks underlying plant‐programmed cell death

R Burke, A McCabe, NR Sonawane… - The Plant …, 2023 - Wiley Online Library
cells that are often buried within the bulk of living plant tissue. We addressed this challenge
by using RNA sequencing and Arabidopsis thaliana suspension cells, a … with three cell death

Single-cell RNA-seq reveals distinct injury responses in different types of DRG sensory neurons

G Hu, K Huang, Y Hu, G Du, Z Xue, X Zhu, G Fan - Scientific reports, 2016 - nature.com
cell death and nerve regeneration. In this study, we performed single-cell RNA-sequencing
(scRNA-seq) … -regulation of the genes associated with cell death such as Pdcd2 in a subset of …

… and analysis of diverse cell death patterns in diabetic kidney disease using microarray-based transcriptome profiling and single-nucleus RNA sequencing

Y Luo, L Liu, C Zhang - Computers in Biology and Medicine, 2024 - Elsevier
… The single-nucleus RNA sequencing (snRNA-seq) dataset … with various types of cell death
pathways: alkaliptosis (7 genes… (4 genes), entotic cell death (15 genes), ferroptosis (64 genes)…

… communications in tumors before and after programmed cell death-1 (PD-1) targeted therapy: an integrative analysis using single-cell RNA and bulk-RNA sequencing …

YQ Jiang, ZX Wang, M Zhong, LJ Shen, X Han… - …, 2021 - Taylor & Francis
… -cell RNA sequencing and bulk RNA sequencing data from samples collected before and
after anti-PD-1 therapy were analyzed. Cell-cell … Bulk-RNA sequencing data were used to …

Analysis of bulk RNA-seq data from sepsis patients reveals sepsis-associated lncRNAs and targeted cell death-related genes contributing to immune …

Y Cheng, L Xu, J Wang, X Cao, D Chen… - Frontiers in …, 2023 - frontiersin.org
… blood whole transcriptome sequencing data (RNA-seq) from … of immune cell types, expression
pattern of cell death-related … to screen out essential immune cell types, lncRNAs and their …

Single cell RNA-sequencing identifies a metabolic aspect of apoptosis in Rbf mutant

MM Ariss, AB Islam, M Critcher, MP Zappia… - Nature …, 2018 - nature.com
… , sensitize cells to apoptosis and define the pattern of cell death in Rbf mutant eye disc.
Thus, these results illustrate how scRNA-seq can be applied to dissect mutant phenotypes. …