Identify, quantify and characterize cellular communication from single-cell RNA sequencing data with scSeqComm

G Baruzzo, G Cesaro, B Di Camillo - Bioinformatics, 2022 - academic.oup.com
cellular communication from scRNA-seq data. Genes associated with the detected effect of
cellular communication are … the effect of cell–cell communication through an integrated Gene …

[HTML][HTML] A review of single-cell RNA-Seq annotation, integration, and cell–cell communication

C Cheng, W Chen, H Jin, X Chen - Cells, 2023 - mdpi.com
… using bulk RNA sequencing may not accurately capture the cellular heterogeneity and
complexity of cell interactions. Single-cell RNAseq based cell–cell communication analysis (…

[HTML][HTML] Comparison of methods and resources for cell-cell communication inference from single-cell RNA-Seq data

D Dimitrov, D Türei, M Garrido-Rodriguez… - … communications, 2022 - nature.com
… Single-cell RNA sequencing (scRNA-Seq) data has become a driving force in the analysis
of the cellular heterogeneity of tissues. Furthermore, Spatial Transcriptomics has recently …

[HTML][HTML] Analysis of single-cell RNA-seq identifies cell-cell communication associated with tumor characteristics

MP Kumar, J Du, G Lagoudas, Y Jiao, A Sawyer… - Cell reports, 2018 - cell.com
… the cellular composition of a tumor, it is crucial to understand how the different cellular
using both bulk and single-cell sequencing data to examine cell-cell communication exist ( …

scConnect: a method for exploratory analysis of cell–cell communication based on single-cell RNA-sequencing data

JET Jakobsson, O Spjuth, MC Lagerström - Bioinformatics, 2021 - academic.oup.com
Motivation Cell to cell communication is critical for all multicellular organisms, and single-cell
sequencing facilitates the construction of full connectivity graphs between cell types in …

CellCommuNet: an atlas of cell–cell communication networks from single-cell RNA sequencing of human and mouse tissues in normal and disease states

Q Ma, Q Li, X Zheng, J Pan - Nucleic Acids Research, 2024 - academic.oup.com
CellCommuNet: an atlas of cell–cell communication networks from single-cell RNA
sequencing of human and mouse tissues Page 1 Nucleic Acids Research, 2024, 52, D597–…

Single-cell RNA-seq reveals dynamic paracrine control of cellular variation

AK Shalek, R Satija, J Shuga, JJ Trombetta, D Gennert… - Nature, 2014 - nature.com
… Here we sequence single-cell RNA-seq libraries prepared from over 1,700 primary mouse
… of cells detectably expressing a given messenger RNA and the transcript’s level within …

[HTML][HTML] Comprehensive analysis of potential cellular communication networks in advanced osteosarcoma using single-cell RNA sequencing data

N Xu, X Wang, L Wang, Y Song, X Zheng… - Frontiers in Genetics, 2022 - frontiersin.org
… In this paper, a single-cell RNA sequencing dataset was taken to a systematic genetic … The
results of Cell communication analysis showed 17 potential cellular communication networks …

[HTML][HTML] Single‐cell RNA sequencing in cancer research

Y Zhang, D Wang, M Peng, L Tang, J Ouyang… - Journal of Experimental …, 2021 - Springer
… , that is, the cellular characteristics resulting in the … cellular communication mechanisms,
which increase the complexity of tumor development. Understanding these communication

[HTML][HTML] Single-cell RNA-Seq reveals heterogeneity of cell communications between Schwann cells and fibroblasts within vestibular schwannoma microenvironment

M Xu, S Wang, Y Jiang, J Wang, Y Xiong… - The American Journal of …, 2022 - Elsevier
… shown to determine the heterogeneity of cellular communication in different individuals.
These findings suggest a microenvironmental mechanism underlying the development of VS. …