A systematic survey of centrality measures for protein-protein interaction networks

M Ashtiani, A Salehzadeh-Yazdi… - BMC systems …, 2018 - Springer
measures. To approach this problem systematically, we … the centrality profile of nodes of
yeast protein-protein interaction networks (PPINs) in order to detect which centrality measure is …

Centrality measure analysis on protein interaction networks

A Ali, VR Hulipalled, SS Patil - 2020 IEEE International …, 2020 - ieeexplore.ieee.org
Centrality identifies the relevance of node or edge in the network. Concerning the PPI
network, we apply centrality measures to detect the influential node. The identification of the hub …

Centrality measures in residue interaction networks to highlight amino acids in proteinprotein binding

G Brysbaert, MF Lensink - Frontiers in Bioinformatics, 2021 - frontiersin.org
… the capability of centrality measures to highlight residues that are essential for the binding
of two proteins on a large set, and second, we compare these measures to show which ones …

Novel centrality metrics for studying essentiality in proteinprotein interaction networks based on group structures

S Rasti, C Vogiatzis - Networks, 2022 - Wiley Online Library
… In this work, we introduce centrality metrics based on group … in protein-protein interaction
networks (PPINs). The … a monotone betweenness centrality measure with a larger betweenness

[PDF][PDF] Selection of most relevant centrality measures: A systematic survey on protein-protein interaction networks

M Ashtiani, A Salehzadeh-Yazdi… - bioRxiv, 2017 - biorxiv.org
measures. To approach this problem systematically, we … the centrality profile of nodes of
yeast protein-protein interaction networks (PPINs) in order to detect which centrality measure is …

Position matters: network centrality considerably impacts rates of protein evolution in the human proteinprotein interaction network

D Alvarez-Ponce, F Feyertag… - Genome biology and …, 2017 - academic.oup.com
network centrality (measured as the number of physical and nonphysical interactions,
betweenness, … 2,429 in yeast, 3,880 in fly, and 11,593 in human), and our centrality measures are …

Identification of essential proteins from weighted proteinprotein interaction networks

M Li, JX Wang, H Wang, Y Pan - Journal of bioinformatics and …, 2013 - World Scientific
… Nine standard centrality measures in weighted network were redened in … protein interaction
network shows that the weighting method improved the performance of centrality measures

DiffSLC: A graph centrality method to detect essential proteins of a protein-protein interaction network

D Mistry, RP Wise, JA Dickerson - PloS one, 2017 - journals.plos.org
… calculations, the variety of centrality measures compared in this study, and the edge clustering
coefficient defined by [22]. The proposed DiffSLC is also defined at the end of the section. …

[HTML][HTML] Comparison of path-based centrality measures in protein-protein interaction networks revealed proteins with phenotypic relevance during adaptation to …

M Gilbert, Z Li, XN Wu, L Rohr, S Gombos, K Harter… - Journal of …, 2021 - Elsevier
centrality measures to describe dynamic rewiring of cellular protein-protein interaction networks
in … We expect the use of path-based centrality measures to be a powerful strategy also in …

A new essential protein discovery method based on the integration of protein-protein interaction and gene expression data

M Li, H Zhang, J Wang, Y Pan - BMC systems biology, 2012 - Springer
… on the integration of protein-protein interaction and gene … based on the protein-protein
interaction network of Saccharomyces … centrality measures: Degree Centrality (DC), Betweenness