[HTML][HTML] CpGAVAS, an integrated web server for the annotation, visualization, analysis, and GenBank submission of completely sequenced chloroplast genome …

C Liu, L Shi, Y Zhu, H Chen, J Zhang, X Lin, X Guan - BMC genomics, 2012 - Springer
annotation of chloroplast genome is urgently needed to dealing with the deluge of chloroplast
genome … the CPGAVAS annotation pipeline, we retrieved 235 chloroplast genome records …

Assembly, annotation and analysis of chloroplast genomes

X Zhong - 2020 - research-repository.uwa.edu.au
Chloroplasts are organelles found in plant cells and … Chloroplasts contain their own circular
genome which is … Chloroplast genome data is useful for phylogenetic analyses, for species …

Comparative analysis of chloroplast genomes: functional annotation, genome-based phylogeny, and deduced evolutionary patterns

J De Las Rivas, JJ Lozano, AR Ortiz - Genome research, 2002 - genome.cshlp.org
… In the case of chloroplasts, we have found in our analysis that these genes acting as
phylogenetic actually form part of important components of the chloroplast biochemical machinery. …

Verdant: automated annotation, alignment and phylogenetic analysis of whole chloroplast genomes

MR McKain, RH Hartsock, MM Wohl… - Bioinformatics, 2017 - academic.oup.com
annotation program, annoBTD. Using annoBTD, Verdant provides accurate annotation of
chloroplast genomes … required for analysis of assembled chloroplast genomes and removes …

[HTML][HTML] Evaluation of chloroplast genome annotation tools and application to analysis of the evolution of coffee species

C Guyeux, JC Charr, HTM Tran, A Furtado, RJ Henry… - PLoS …, 2019 - journals.plos.org
… of this data to deliver high quality phylogenetic analyses. In this study, the two main tools for
chloroplast genome annotation were compared. More consistent detection and annotation of …

[HTML][HTML] CGAP: a new comprehensive platform for the comparative analysis of chloroplast genomes

J Cheng, X Zeng, G Ren, Z Liu - BMC bioinformatics, 2013 - Springer
… for the comparative and phylogenetic analysis of chloroplast genomes. Thus, we …
analysis of complete chloroplast genomes which was named as chloroplast genome analysis

[HTML][HTML] Comparative and phylogenetic analyses of the chloroplast genomes of species of Paeoniaceae

L Wu, L Nie, Q Wang, Z Xu, Y Wang, C He, J Song… - Scientific Reports, 2021 - nature.com
… has been applied to phylogenetic analysis and species … chloroplast genome to analyse the
relationship among species of Paeoniaceae. In this study, the complete chloroplast genomes

[HTML][HTML] The first complete chloroplast genome sequences in Actinidiaceae: genome structure and comparative analysis

X Yao, P Tang, Z Li, D Li, Y Liu, H Huang - PloS one, 2015 - journals.plos.org
… and chloroplast genome evolution in asterids, here we report the complete chloroplast genome
… chinensis var deliciosa, the first cp genomes for the Actinidiaceae, obtained through de …

[HTML][HTML] Revisiting chloroplast genomic landscape and annotation towards comparative chloroplast genomes of Rhamnaceae

K Wanichthanarak, I Nookaew, P Pasookhush… - BMC Plant …, 2023 - Springer
… the revision of genome annotation before comparative genomic analyses is necessary to
prevent the propagation of errors and complications in downstream analysis and interpretation. …

[HTML][HTML] Assembly, annotation and analysis of the chloroplast genome of the Algarrobo tree Neltuma pallida (subfamily: Caesalpinioideae)

E Caycho, R La Torre, G Orjeda - BMC Plant Biology, 2023 - Springer
… , annotate and analyze the chloroplast genome of Neltuma pallida, and to compare it with
other chloroplast genomes … In this study, we discovered the chloroplast genome content of the …