[HTML][HTML] COGNATE: co mparative genea nno t ation charact e rizer

J Wilbrandt, B Misof, O Niehuis - BMC genomics, 2017 - Springer
… To illustrate this, we used results of COGNATE from analyzing the latest gene set of Apis
mellifera (see above) and compared the obtained values of mean and median of exon size and …

Structural insights into cognate versus near‐cognate discrimination during decoding

X Agirrezabala, E Schreiner, LG Trabuco, J Lei… - The EMBO …, 2011 - embopress.org
… This study presents the cryo‐EM structure of the ribosome containing a near‐cognate ternary
complex. It reveals the structural basis of the induced‐fit mechanism that is involved in the …

Structure and expression of a human gene coding for a 71 kd heat shock 'cognate'protein

B Dwornczak, ME Mirault - Nucleic acids research, 1987 - academic.oup.com
… so far, hsp70 gene families include cognate genes (hsc70) … and cognate members of the
human hsp70 gene family. … probes, one contained an hsc70 gene. Its complete sequence is …

Structural organization of the spinach endoplasmic reticulum-luminal 70-kilodalton heat-shock cognate gene and expression of 70-kilodalton heat-shock genes during …

JV Anderson, QB Li, DW Haskell, CL Guy - Plant Physiology, 1994 - academic.oup.com
… HS70 genes have been further classified into two groups: (a) cognate (HSC70) genes,
which are expressed under normal growth conditions, frequently contain introns and are not …

[PDF][PDF] COGNATE: comparative gene annotation

J Wilbrandt, B Misof, O Niehuis - 2017 - bmcgenomics.biomedcentral.com
… To illustrate this, we used results of COGNATE from analyzing the latest gene set of Apis
mellifera (see above) and compared the obtained values of mean and median of exon size and …

[HTML][HTML] On the contribution of protein spatial organization to the physicochemical interconnection between proteins and their cognate mRNAs

A Beier, B Zagrovic, AA Polyansky - Life, 2014 - mdpi.com
… Importantly, in the present study we do not account for any structural organization of mRNA,
… its cognate protein. In contrast to proteins, however, information about structural organization

COGNATE: Comparative Gene Annotation Characterizer

J Wilbrandt - Gene Prediction: Methods and Protocols, 2019 - Springer
… , gene lengths and exon counts. We developed the tool COGNATE to gather this data from a
given structuralCOGNATE relies on clearly stated parameter definitions and thus serves to …

Transcription-driven genome organization: a model for chromosome structure and the regulation of gene expression tested through simulations

PR Cook, D Marenduzzo - Nucleic acids research, 2018 - academic.oup.com
… We suggest tethering a gene close to a cluster containing … As a result, the activity of any gene
is directly influenced by the … transcription factors binding to cognate sites on long polymers. …

The organization of the Pm promoter of the TOL plasmid reflects the structure of its cognate activator protein XylS

B Kessler, KN Timmis, V de Lorenzo - Molecular and General Genetics …, 1994 - Springer
… To place the distal Omr element in the opposite direction from that of the proximal site in
Pm invI and Pm invlI, we synthesized a linker including the cognate inverted L sequence 5'-…

The structure, organization and differential expression of the gene encoding rat heme oxygenase-2

WK McCoubrey Jr, MD Maines - Gene, 1994 - Elsevier
… sequence of the rat gene encoding HO-2, the major heme oxygenase isozyme in the brain.
This isozyme is the constitutive cognate of HSP32 (HO-l). The 12 563-bp gene consists of five …