Combined lncRNA and mRNA Expression Profiles Identified the lncRNA–miRNA–mRNA Modules Regulating the Cold Stress Response in Ammopiptanthus nanus

M Zhu, Q Dong, J Bing, Songbuerbatu, L Zheng… - International Journal of …, 2023 - mdpi.com
… nanus and 1322 of them were differentially expressed under cold stress, … in the cold stress
response by forming lncRNA–mRNA modules and regulating the genes encoding the stress-…

Identification and characterization of long non‐coding RNAs as competing endogenous RNAs in the cold stress response of Triticum aestivum

Q Lu, Q Xu, F Guo, Y Lv, C Song, M Feng, J Yu… - Plant …, 2020 - Wiley Online Library
modules related to cold resistance in the lncRNA–mRNA weighted co-expression network,
and the functions of mRNAs were similar in each module… in low-temperature responses. RNA …

Transcriptional regulatory network of plant cold-stress responses

S Kidokoro, K Shinozaki, K Yamaguchi-Shinozaki - Trends in Plant Science, 2022 - cell.com
cold-stress responses. Focusing on two major signaling pathways that respond to cold stress,
Cold-stress signaling pathways are closely associated with other signaling pathways such …

Integration of transcriptional and post-transcriptional analysis revealed the early response mechanism of sugarcane to cold stress

X Huang, Y Liang, B Zhang, X Song, Y Li, Z Qin… - Frontiers in …, 2021 - frontiersin.org
response of sugarcane seedlings to cold stress, we studied the expression profiles and relevant
genes in S. spontaneum GX87-16 seedlings treated with cold stress (… /mRNA regulation …

Fine-tuning cold stress response through regulated cellular abundance and mechanistic actions of transcription factors

SNA Abdullah, AM Azzeme, K Yousefi - Frontiers in Plant Science, 2022 - frontiersin.org
… in mRNAs through perfect or near perfect base-pairing and there can be multiple mRNA
targets … over-representation of distinct functional modules such as cold stress, transcription and …

A DEAD Box RNA Helicase Is Critical for Pre-mRNA Splicing, Cold-Responsive Gene Regulation, and Cold Tolerance in Arabidopsis

Q Guan, J Wu, Y Zhang, C Jiang, R Liu, C Chai… - The Plant …, 2013 - academic.oup.com
… To investigate possible functions of these four genes in cold stress responses, we isolated
their T-DNA knockouts (see Supplemental Figures 11A to 11D online). As shown in Figures …

Genome-scale cold stress response regulatory networks in ten Arabidopsis thalianaecotypes

P Barah, ND Jayavelu, S Rasmussen, HB Nielsen… - BMC genomics, 2013 - Springer
… have been developed to identify regulatory modules and their condition-specific regulators
… Genes showing significant variation in mRNA expression level in A. thaliana during different …

[HTML][HTML] Effects of early cold stress on gene expression in Chlamydomonas reinhardtii

L Li, H Peng, S Tan, J Zhou, Z Fang, Z Hu, L Gao, T Li… - Genomics, 2020 - Elsevier
… the expression of specific mRNAs in response to external stimuli. Module 7 was mainly
enriched with genes of the function related to oxidative stress response, indicating that oxidative …

[PDF][PDF] Controls of mRNA degradation in Arabidopsis: Investigating cold stress response and mRNA decay machinery

荒江星拓 - 2019 - eprints.lib.hokudai.ac.jp
mRNA stability. In Chapter 2, I describe the functional significance of mRNA stability regulation
in the cold stress response in Arabidopsis cells by monitoring temporal changes in mRNA

Arabidopsis Chloroplast RNA Binding Proteins CP31A and CP29A Associate with Large Transcript Pools and Confer Cold Stress Tolerance by Influencing Multiple …

C Kupsch, H Ruwe, S Gusewski, M Tillich, I Small… - The Plant …, 2012 - academic.oup.com
cold stress and associate with multiple mRNAs suggest that they may promote the expression
of many chloroplast mRNA … altered mRNA accumulation under cold stress conditions. We …