[HTML][HTML] Understanding complex signaling networks through models and metaphors

US Bhalla - Progress in biophysics and molecular biology, 2003 - Elsevier
… Once we get to really complex signaling networks such as those involved in cell fate
decisions, the modular approach becomes difficult to use. First, it may be difficult to find a clean …

[HTML][HTML] Quantitative analysis of signaling networks

HM Sauro, BN Kholodenko - Progress in biophysics and molecular biology, 2004 - Elsevier
… between natural signaling networks and man-made networks. … signaling networks from a
more theoretical point of view. Thus, rather than building numerical models of complex networks

The statistical mechanics of complex signaling networks: nerve growth factor signaling

KS Brown, CC Hill, GA Calero, CR Myers… - Physical …, 2004 - iopscience.iop.org
… The inherent complexity of cellular signaling networks and their importance to a wide range
… predictions for complex cellular signaling networks. A key difficulty with signaling models is …

Modeling of signaling networks

SR Neves, R Iyengar - Bioessays, 2002 - Wiley Online Library
… The cell appears to use these complex networks of interacting pathways and regulatory …
the ‘‘systems behavior’’ of signaling networks. Rather it has become necessary to devel- …

Reduction of complex signaling networks to a representative kernel

JR Kim, J Kim, YK Kwon, HY Lee… - … signaling, 2011 - science.org
… We applied the algorithm to the signaling networks of E. coli, S. cerevisiae, and H. sapiens,
where we define the signaling network as an integrated network of all the signaling pathways …

Emergence of complex dynamics in a simple model of signaling networks

LAN Amaral, A Díaz-Guilera… - Proceedings of the …, 2004 - National Acad Sciences
… Emergence of complex dynamics in simple signaling networks. (a) The units constituting
the network, which are located on the nodes of a one-dimensional lattice, have bidirectional …

Cell adhesion in development: a complex signaling network

JP Thiery - Current opinion in genetics & development, 2003 - Elsevier
… such complex programs [2]. The field of adhesion has become formidably complex because
of … of function that might indicate the role that adhesion molecules play in signaling networks. …

Logic-based models for the analysis of cell signaling networks

MK Morris, J Saez-Rodriguez, PK Sorger… - Biochemistry, 2010 - ACS Publications
… to enhance the utility of logic-based methods for studying the relationship between
environmental inputs and phenotypic or signaling state outputs of complex signaling networks. …

[HTML][HTML] Signaling networks: the origins of cellular multitasking

JD Jordan, EM Landau, R Iyengar - Cell, 2000 - cell.com
signaling networks is the formation of complexes of signaling proteins. The organization of
these complexes is dynamic and the complexes … the best described of these complexes is the …

[HTML][HTML] Qualitative networks: a symbolic approach to analyze biological signaling networks

MA Schaub, TA Henzinger, J Fisher - BMC systems biology, 2007 - Springer
… We believe that the possibility of in-silico execution of putative models is an efficient way to
help biologists understand the behavior of a complex signaling networks. Counter example …