[HTML][HTML] Understanding complex signaling networks through models and metaphors
US Bhalla - Progress in biophysics and molecular biology, 2003 - Elsevier
… Once we get to really complex signaling networks such as those involved in cell fate
decisions, the modular approach becomes difficult to use. First, it may be difficult to find a clean …
decisions, the modular approach becomes difficult to use. First, it may be difficult to find a clean …
[HTML][HTML] Quantitative analysis of signaling networks
HM Sauro, BN Kholodenko - Progress in biophysics and molecular biology, 2004 - Elsevier
… between natural signaling networks and man-made networks. … signaling networks from a
more theoretical point of view. Thus, rather than building numerical models of complex networks…
more theoretical point of view. Thus, rather than building numerical models of complex networks…
The statistical mechanics of complex signaling networks: nerve growth factor signaling
… The inherent complexity of cellular signaling networks and their importance to a wide range
… predictions for complex cellular signaling networks. A key difficulty with signaling models is …
… predictions for complex cellular signaling networks. A key difficulty with signaling models is …
Modeling of signaling networks
SR Neves, R Iyengar - Bioessays, 2002 - Wiley Online Library
… The cell appears to use these complex networks of interacting pathways and regulatory …
the ‘‘systems behavior’’ of signaling networks. Rather it has become necessary to devel- …
the ‘‘systems behavior’’ of signaling networks. Rather it has become necessary to devel- …
Reduction of complex signaling networks to a representative kernel
JR Kim, J Kim, YK Kwon, HY Lee… - … signaling, 2011 - science.org
… We applied the algorithm to the signaling networks of E. coli, S. cerevisiae, and H. sapiens,
where we define the signaling network as an integrated network of all the signaling pathways …
where we define the signaling network as an integrated network of all the signaling pathways …
Emergence of complex dynamics in a simple model of signaling networks
LAN Amaral, A Díaz-Guilera… - Proceedings of the …, 2004 - National Acad Sciences
… Emergence of complex dynamics in simple signaling networks. (a) The units constituting
the network, which are located on the nodes of a one-dimensional lattice, have bidirectional …
the network, which are located on the nodes of a one-dimensional lattice, have bidirectional …
Cell adhesion in development: a complex signaling network
JP Thiery - Current opinion in genetics & development, 2003 - Elsevier
… such complex programs [2]. The field of adhesion has become formidably complex because
of … of function that might indicate the role that adhesion molecules play in signaling networks. …
of … of function that might indicate the role that adhesion molecules play in signaling networks. …
Logic-based models for the analysis of cell signaling networks
… to enhance the utility of logic-based methods for studying the relationship between
environmental inputs and phenotypic or signaling state outputs of complex signaling networks. …
environmental inputs and phenotypic or signaling state outputs of complex signaling networks. …
[HTML][HTML] Signaling networks: the origins of cellular multitasking
JD Jordan, EM Landau, R Iyengar - Cell, 2000 - cell.com
… signaling networks is the formation of complexes of signaling proteins. The organization of
these complexes is dynamic and the complexes … the best described of these complexes is the …
these complexes is dynamic and the complexes … the best described of these complexes is the …
[HTML][HTML] Qualitative networks: a symbolic approach to analyze biological signaling networks
MA Schaub, TA Henzinger, J Fisher - BMC systems biology, 2007 - Springer
… We believe that the possibility of in-silico execution of putative models is an efficient way to
help biologists understand the behavior of a complex signaling networks. Counter example …
help biologists understand the behavior of a complex signaling networks. Counter example …