Improving the accuracy of whole genome prediction for complex traits using the results of genome wide association studies

Z Zhang, U Ober, M Erbe, H Zhang, N Gao, J He, J Li… - PloS one, 2014 - journals.plos.org
… Utilizing the whole genomic variation of complex traits to predict the yet-to… genetic values
via whole genome prediction (WGP) and to infer the underlying genetic architecture via genome

A guide on deep learning for complex trait genomic prediction

M Pérez-Enciso, LM Zingaretti - Genes, 2019 - mdpi.com
… tool to make accurate predictions from complex data such as … DL specific applications to
genomic prediction, since there … provide a basic outline of genomic prediction theory and current …

KAML: improving genomic prediction accuracy of complex traits using machine learning determined parameters

L Yin, H Zhang, X Zhou, X Yuan, S Zhao, X Li, X Liu - Genome biology, 2020 - Springer
… application of genomic selection and genomic prediction (GS/… covariates in the LMM improved
the prediction accuracy [15, 16], … to construct a trait-specific genomic relationship matrix (…

Accuracy of genomic prediction of complex traits in sugarcane

BJ Hayes, X Wei, P Joyce, F Atkin, E Deomano… - Theoretical and Applied …, 2021 - Springer
… of genomic selection to increase the rate of genetic gain for these traits by deriving genomic
… We evaluated the three different genomic prediction approaches GBLUP, genomic single …

Accurate prediction of genetic values for complex traits by whole-genome resequencing

T Meuwissen, M Goddard - Genetics, 2010 - academic.oup.com
… In conclusion, dominance variance may reduce the accuracy of genomic selection
noticeably, if few very large QTL show a lot of dominance, but it does not eliminate its …

Complex-trait prediction in the era of big data

G de Los Campos, AI Vazquez, S Hsu, L Lello - Trends in Genetics, 2018 - cell.com
Accurate prediction of complex traits … to predict complex traits. However, capitalizing on the
untapped potential of Big Data will require important changes in the way genomic prediction

Kernel-based whole-genome prediction of complex traits: a review

G Morota, D Gianola - Frontiers in genetics, 2014 - frontiersin.org
… for genome-enabled prediction. Complex traits are presumably influenced by many genomic
… This review centers on whole-genome regression using kernel methods applied to a wide …

Multi-trait genomic prediction using in-season physiological parameters increases prediction accuracy of complex traits in US wheat

D Shahi, J Guo, S Pradhan, J Khan, M Avci, N Khan… - BMC genomics, 2022 - Springer
… the predictive ability of expensive and labor-intensive traits. In this study, we assessed
the potential use of a MT genomic prediction model by incorporating two physiological traits (…

Comparison of genomic selection models for exploring predictive ability of complex traits in breeding programs

LF Merrick, AH Carter - The Plant Genome, 2021 - Wiley Online Library
… GS to select and improve complex traits (Bernardo, 2008). … the predictive ability and genetic
architecture of a complex trait … to predict complex traits while deducing the most accurate

Genetic architecture of complex traits and accuracy of genomic prediction: coat colour, milk-fat percentage, and type in Holstein cattle as contrasting model traits

BJ Hayes, J Pryce, AJ Chamberlain, PJ Bowman… - PLoS …, 2010 - journals.plos.org
… the accuracy of genomic prediction which can be achieved for this trait with the accuracy of
genomic predictions … a clear effect of trait architecture on the accuracy of genomic predictions. …