A computational odyssey: uncovering classical β-lactamase inhibitors in dry fruits

A Javid, M Ahmed - Journal of Biomolecular Structure and …, 2024 - Taylor & Francis
Computational approaches based on structural knowledge have been used to identify
possible β-lactamase inhibitors from selected dry fruits. Herein, state-of-the-art bioinformatic …

A Computational Odyssey into Microbial Communities Across Ecosystems

C Melkonian - 2021 - research.vu.nl
… This thesis uses mainly computational data-driven approaches and secondly
experimental work to understand and answer questions of variation, taxonomy and functional …

A β-lactamase-producing plasmid from Neisseria gonorrhoeae carrying a unique 6 bp deletion in blaTEM-1 encoding a truncated 24 kDa TEM-1 penicillinase that …

R Singh, SR Perera, GS Katselis… - Journal of …, 2019 - academic.oup.com
… The bla TEM-1 sequences on pJD5 and pJRD20 were examined both computationally and
manually with DNAMAN software (v9 with default parameters, Lynnon Corp). Computational

Novel metallo‐βlactamases inhibitors restore the susceptibility of carbapenems to New Delhi metallo‐lactamase‐1 (NDM‐1)‐harbouring bacteria

Y Guo, H Liu, M Yang, R Ding, Y Gao… - British Journal of …, 2024 - Wiley Online Library
… to inhibit all tested metallo‐βlactamases and showed an in vitro synergistic bactericidal
effect with meropenem against metallo‐βlactamases‐producing bacteria. Dexrazoxane, …

[HTML][HTML] Drug-target binding quantitatively predicts optimal antibiotic dose levels in quinolones

F Clarelli, A Palmer, B Singh, M Storflor… - PLOS Computational …, 2020 - journals.plos.org
… a mechanistic computational modeling framework (COMBAT- COmputational Model of …
-T solution and imaged at 700 nm and 800 nm using a Li-Cor Odyssey Sa scanning system. …

Structure-based discovery of lipoteichoic acid synthase inhibitors

X Chee Wezen, A Chandran, RS Eapen… - Journal of Chemical …, 2022 - ACS Publications
… Additionally, lead optimization driven by our computational … class of inhibitors that could
potentiate β-lactams against methicillin-… , and visualized using the Odyssey CLx Imaging System. …

[PDF][PDF] Exploiting Evolutionary Tradeoffs to Fight Evolution of Antibiotic Resistance

YT Tamer - 2019 - utswmed-ir.tdl.org
… We carried out an extensive experimental and computational study aimed at quantitatively
… DHFR protein amount was quantified using an ODYSSEY infrared imaging system (LI-COR)…

[HTML][HTML] Integration of molecular modelling and in vitro studies to inhibit LexA proteolysis

ZP Schuurs, JP McDonald, LV Croft… - Frontiers in Cellular …, 2023 - frontiersin.org
… This reduces the computational resources required and speeds up how long the screening
campaign takes… The gels were imaged on an Odyssey CLx and quantified with Image Studio. …

[HTML][HTML] Rapid inference of antibiotic resistance and susceptibility by genomic neighbour typing

K Břinda, A Callendrello, KC Ma, DR MacFadden… - Nature …, 2020 - nature.com
… First, RASE identifies the lineage of the best-matching reference genome and estimates the
confidence of lineage assignment by comparing the two best-matching lineages to compute

[HTML][HTML] Predictive modeling of estrogen receptor agonism, antagonism, and binding activities using machine-and deep-learning approaches

HL Ciallella, DP Russo, LM Aleksunes, FA Grimm… - Laboratory …, 2021 - Elsevier
… for toxicity evaluation using computational toxicology is … computational toxicology modeling
continues to exist, and consensus predictions will still be the best strategy for computational